DY259818

Overview
NameDY259818
Unique NameDY259818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1049
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.819e-29
Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = 3 
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQ----TINIG---TKDDVSAV-KKTGCC 455
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H+ SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE A+     +IYR + +   DV ++   +  G     T ++G    + +VS +   +GCC
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSITSSVGPCSPQQNVSDIGPDSGCC 216
[Close]
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.211e-28
Identity = 61/131 (46.56%), Postives = 85/131 (64.89%), Query Frame = 3 
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 395
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188
[Close]
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.211e-28
Identity = 61/131 (46.56%), Postives = 85/131 (64.89%), Query Frame = 3 
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 395
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188
[Close]
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.211e-28
Identity = 61/131 (46.56%), Postives = 85/131 (64.89%), Query Frame = 3 
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 395
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188
[Close]
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.211e-28
Identity = 61/131 (46.56%), Postives = 85/131 (64.89%), Query Frame = 3 
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 395
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188
[Close]
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.211e-28
Identity = 61/131 (46.56%), Postives = 85/131 (64.89%), Query Frame = 3 
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 395
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188
[Close]
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.211e-28
Identity = 61/131 (46.56%), Postives = 85/131 (64.89%), Query Frame = 3 
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 395
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188
[Close]
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.211e-28
Identity = 61/131 (46.56%), Postives = 85/131 (64.89%), Query Frame = 3 
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 395
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188
[Close]
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.211e-28
Identity = 61/131 (46.56%), Postives = 85/131 (64.89%), Query Frame = 3 
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG 395
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY  +     D+ ++   +  G
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG 188
[Close]
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.097e-27
Identity = 64/153 (41.83%), Postives = 95/153 (62.09%), Query Frame = 3 
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKT--GCC 455
            QI  TAGQE +R+IT +YYRG+ GALLVYD+TR  TF ++  WLK+ R + +SN+ I+L+GNK+D+   RAVS E+ + FA++    F+ETSA  + NVE AF    ++IY  + +   D+ ++   +  G      +K D +  K    GCC
Sbjct:   57 QIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDINNESFGIKLGAPT---SKQDGTDQKPAGGGCC 206
The following BLAST results are available for this feature:
BLAST of DY259818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
RAB2B_MOUSE5.819e-2943.40Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2A_RAT2.211e-2846.56Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2A_RABIT2.211e-2846.56Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB2.211e-2846.56Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE2.211e-2846.56Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA2.211e-2846.56Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN2.211e-2846.56Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK2.211e-2846.56Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA2.211e-2846.56Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2A_DICDI1.097e-2741.83Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YE17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259818 ID=DY259818; Name=DY259818; organism=Citrus clementina; type=EST; length=1049bp
CTCAGATTTCCTTTACCGCCGGCCAAGAACGATATCGTGCTATCACAAGT
GCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCG
ACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATC
ACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTG
CGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTCGCTGAGAA
AGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTTGAATGTTG
AAAATGCCTTCACCGAAGTGCTCACTCAGATATATCGAGTTGTTAGTAGG
AAGGCTCTTGATGTAGGTGATGACCCAGCAGCCTTGCCCAAGGGTCAAAC
TATTAATATTGGTACTAAAGATGATGTATCGGCTGTGAAAAAGACTGGAT
GCTGCTCTGCATAATCTGCAGCTTCTAAGGAAATTCCAGGTGGTAAATAA
TAGTTTCTTTACCATTCAGACCTTACTTTCCATGAGTATGCAAACACCTT
GCCTTAATTTGCTTGGACCGGAACAAATACAATGTAATCAGCAAAGATCT
CTTCTCTTACCTTCCCCCTTTCCTTGTCGTATCCTCACCTCTGTTCACTT
AAGCGACCCCAACATCTCCCCACCTACCAATCTTACTCGGTATAAGCTTT
TAGATTTATCTCCCACTCTAGTTTACATTATACTCCAGCGAACGTAATAC
GACCTAAAATTAGTTATCAAAAATTCACTATTCTATTATTCCCAAACTGT
ACACCTCTCACGTAATATAGATCTTCAATCTCTTTCTACCAGACTTCGGT
CAATTCCCCCTTACACTACTCCTATACCCTCCATCAGCCAAGCACAGACA
ACAATTGTCATGCATCTCATTACCTCCTAAATCATATAAATTATACTGAC
TATTCCCGTACCTCTACAGGTCAATACATTTTGTAGGTGATACTCTAGAA
CAGCCCCTTCAGCCGTACACTCCACTACTTACCTCCCCCTCAAATCTCC
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