DY259818

Overview
NameDY259818
Unique NameDY259818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1049
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 9.289e-27
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDV 365
            QI  TAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+ E+A+ FAE+    F+E SA    NVE+AF E   +IY+ +   +LD+
Sbjct:   63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL 183          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 9.289e-27
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDV 365
            QI  TAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+ E+A+ FAE+    F+E SA    NVE+AF E   +IY+ +   +LD+
Sbjct:   63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL 183          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 9.289e-27
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDV 365
            QI  TAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+ E+A+ FAE+    F+E SA    NVE+AF E   +IY+ +   +LD+
Sbjct:   63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL 183          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 9.289e-27
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDV 365
            QI  TAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+ E+A+ FAE+    F+E SA    NVE+AF E   +IY+ +   +LD+
Sbjct:   63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL 183          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 121.324 bits (303), Expect = 9.289e-27
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDV 365
            QI  TAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+ E+A+ FAE+    F+E SA    NVE+AF E   +IY+ +   +LD+
Sbjct:   63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL 183          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 9.289e-27
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDV 365
            QI  TAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKADL   R V+ E+A+ FAE+    F+E SA    NVE+AF E   +IY+ +   +LD+
Sbjct:   63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL 183          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.988e-25
Identity = 56/111 (50.45%), Postives = 79/111 (71.17%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIY 335
            Q+  TAGQE+Y +IT +YY+GA+GAL+VY++    +F N+E+WLK+ R++   +  IMLVGNK+DL+  R VST + + FAEK    F+ETSAL+S NVE AF  +   IY
Sbjct:   63 QLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIY 173          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.988e-25
Identity = 59/124 (47.58%), Postives = 82/124 (66.13%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD 374
            QI  TAGQER+RA+T +YYRGA GALLVYD+TR +T+ ++  WL + R+ T+ N VIML+GNK DL   R V+ E+A +FA++    F+E+SA    NVE AF      I++ V    +D+  D
Sbjct:   60 QIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQEGNVDLIPD 183          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 5.097e-25
Identity = 66/153 (43.14%), Postives = 92/153 (60.13%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQI-YRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCS 458
            QI  TAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK+DL   RA+  E A++FA++    FMETSA ++ NVE AF  +   I  R+ S+ A +    P    +GQ +           +K GCCS
Sbjct:   60 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQPV----------AQKNGCCS 202          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.136e-24
Identity = 64/154 (41.56%), Postives = 93/154 (60.39%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCSA 461
            QI  TAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK+DL   + V+TE A++FA++    FMETSA  + NV+ AF  +   I   ++ +       PA +  +GQ +N          +KT CCS+
Sbjct:   60 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQPVN----------QKTSCCSS 203          
The following BLAST results are available for this feature:
BLAST of DY259818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
RAB14_RAT9.289e-2749.59Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB9.289e-2749.59Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG9.289e-2749.59Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE9.289e-2749.59Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN9.289e-2749.59Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK9.289e-2749.59Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RB11B_DICDI2.988e-2550.45Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RAB14_DICDI2.988e-2547.58Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
RBD2A_ARATH5.097e-2543.14Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
YPTM2_MAIZE1.136e-2441.56GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YE17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259818 ID=DY259818; Name=DY259818; organism=Citrus clementina; type=EST; length=1049bp
CTCAGATTTCCTTTACCGCCGGCCAAGAACGATATCGTGCTATCACAAGT
GCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCG
ACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATC
ACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTG
CGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTCGCTGAGAA
AGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTTGAATGTTG
AAAATGCCTTCACCGAAGTGCTCACTCAGATATATCGAGTTGTTAGTAGG
AAGGCTCTTGATGTAGGTGATGACCCAGCAGCCTTGCCCAAGGGTCAAAC
TATTAATATTGGTACTAAAGATGATGTATCGGCTGTGAAAAAGACTGGAT
GCTGCTCTGCATAATCTGCAGCTTCTAAGGAAATTCCAGGTGGTAAATAA
TAGTTTCTTTACCATTCAGACCTTACTTTCCATGAGTATGCAAACACCTT
GCCTTAATTTGCTTGGACCGGAACAAATACAATGTAATCAGCAAAGATCT
CTTCTCTTACCTTCCCCCTTTCCTTGTCGTATCCTCACCTCTGTTCACTT
AAGCGACCCCAACATCTCCCCACCTACCAATCTTACTCGGTATAAGCTTT
TAGATTTATCTCCCACTCTAGTTTACATTATACTCCAGCGAACGTAATAC
GACCTAAAATTAGTTATCAAAAATTCACTATTCTATTATTCCCAAACTGT
ACACCTCTCACGTAATATAGATCTTCAATCTCTTTCTACCAGACTTCGGT
CAATTCCCCCTTACACTACTCCTATACCCTCCATCAGCCAAGCACAGACA
ACAATTGTCATGCATCTCATTACCTCCTAAATCATATAAATTATACTGAC
TATTCCCGTACCTCTACAGGTCAATACATTTTGTAGGTGATACTCTAGAA
CAGCCCCTTCAGCCGTACACTCCACTACTTACCTCCCCCTCAAATCTCC
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