DY259823

Overview
NameDY259823
Unique NameDY259823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length902
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259823 vs. ExPASy Swiss-Prot
Match: ACON_STAAM (Aconitate hydratase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=acnA PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.378e-41
Identity = 64/119 (53.78%), Postives = 83/119 (69.75%), Query Frame = 2
Query:  218 GEFGKFYSLPALNDPRIEK---LPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 565
            G+   +Y L A+ +  I K   LPYSIR+LLES +R  D+F +  + I+ +  +      + E+PFKP+RV+LQDFTGVPAVVDLA +R AM+ +G D  KINP VPVDLVIDHSVQVD
Sbjct:   17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLRQEDDFVITDDHIKALSQFGKDG-NEGEVPFKPSRVILQDFTGVPAVVDLASLRKAMDDVGGDITKINPEVPVDLVIDHSVQVD 134          

HSP 2 Score: 69.3218 bits (168), Expect = 5.378e-41
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 3
Query:  585 AVKANMEFEFQRNKERFAFLKWGSSAFHNMAGVPPGSGIVHQVNLEYLGRVV 740
            A++ NM+ EF+RN ER+ FL W + AF N   VPP +GIVHQVNLEYL  VV
Sbjct:  141 ALERNMKLEFERNYERYQFLNWATKAFDNYNAVPPATGIVHQVNLEYLASVV 192          

HSP 3 Score: 21.9422 bits (45), Expect = 5.378e-41
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  766 PDRVVGIDSPTP*I*GVG 819
            PD +VG DS T  I G+G
Sbjct:  205 PDTLVGTDSHTTMINGIG 222          
BLAST of DY259823 vs. ExPASy Swiss-Prot
Match: ACON_STAAC (Aconitate hydratase OS=Staphylococcus aureus (strain COL) GN=acnA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.378e-41
Identity = 64/119 (53.78%), Postives = 83/119 (69.75%), Query Frame = 2
Query:  218 GEFGKFYSLPALNDPRIEK---LPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 565
            G+   +Y L A+ +  I K   LPYSIR+LLES +R  D+F +  + I+ +  +      + E+PFKP+RV+LQDFTGVPAVVDLA +R AM+ +G D  KINP VPVDLVIDHSVQVD
Sbjct:   17 GQSYTYYDLKAVEEQGITKVSNLPYSIRVLLESLLRQEDDFVITDDHIKALSQFGKDG-NEGEVPFKPSRVILQDFTGVPAVVDLASLRKAMDDVGGDITKINPEVPVDLVIDHSVQVD 134          

HSP 2 Score: 69.3218 bits (168), Expect = 5.378e-41
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 3
Query:  585 AVKANMEFEFQRNKERFAFLKWGSSAFHNMAGVPPGSGIVHQVNLEYLGRVV 740
            A++ NM+ EF+RN ER+ FL W + AF N   VPP +GIVHQVNLEYL  VV
Sbjct:  141 ALERNMKLEFERNYERYQFLNWATKAFDNYNAVPPATGIVHQVNLEYLASVV 192          

HSP 3 Score: 21.9422 bits (45), Expect = 5.378e-41
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  766 PDRVVGIDSPTP*I*GVG 819
            PD +VG DS T  I G+G
Sbjct:  205 PDTLVGTDSHTTMINGIG 222          
BLAST of DY259823 vs. ExPASy Swiss-Prot
Match: ACON_RICTY (Aconitate hydratase OS=Rickettsia typhi GN=acnA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.314e-41
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  266 IEKLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 565
            + KLPYS+R+LLE+ +R   N    KE++    +W  +     EI F PARVL+QDFTGVPA+VDLA MRDAM K+G +  KINPL+PVDLVIDHSV VD
Sbjct:   36 LNKLPYSLRVLLENVLRTSGN----KENLLVFKEWLKTKKSNTEIDFMPARVLMQDFTGVPAIVDLAAMRDAMQKIGCNPLKINPLIPVDLVIDHSVSVD 131          

HSP 2 Score: 73.1738 bits (178), Expect = 6.314e-41
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 3
Query:  579 ENAVKANMEFEFQRNKERFAFLKWGSSAFHNMAGVPPGSGIVHQVNLEYLGRVVLITTGMANP 767
            + + + N++ E +RN ER+ FLKWG  AF+N   VPPG+GI HQVNLEYL +VV    G A P
Sbjct:  136 KESFEQNVQMEMKRNIERYQFLKWGQQAFNNFKVVPPGTGICHQVNLEYLSKVVWYNDGTAYP 198          
BLAST of DY259823 vs. ExPASy Swiss-Prot
Match: ACON_STRMU (Aconitate hydratase OS=Streptococcus mutans GN=acn PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 8.225e-41
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 2
Query:  257 DPRIEKLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 565
            D  ++ LPY+I+ILLES +R  D+  V K +IE +  + + AP Q E+PFKP+RV+LQDFTGVP VVDLA MRDA+ + G   + INP +PVDLVIDHSVQVD
Sbjct:   28 DIELDSLPYTIKILLESLLRKHDDICVTKNNIETLFHYNSKAP-QGEVPFKPSRVILQDFTGVPVVVDLASMRDAVVENGGSPDLINPEIPVDLVIDHSVQVD 129          

HSP 2 Score: 71.2478 bits (173), Expect = 8.225e-41
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 3
Query:  579 ENAVKANMEFEFQRNKERFAFLKWGSSAFHNMAGVPPGSGIVHQVNLEYLGRVVLITTGMANP 767
            ++A  AN++ EF+RN ER+ FLKW    F N   VPP +GI+HQVNLE+L  V++   G   P
Sbjct:  134 QDAFDANIDLEFERNNERYEFLKWAEKTFENYRAVPPATGIIHQVNLEFLSDVIINKDGFLYP 196          
BLAST of DY259823 vs. ExPASy Swiss-Prot
Match: ACON_RICBR (Aconitate hydratase OS=Rickettsia bellii (strain RML369-C) GN=acnA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.396e-40
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = 2
Query:  257 DPRIEKLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSG 580
            D  ++KLPYS+R+L E+ +R        K+++    +W  +     EI F PARVL+QDFTGVPA+VDLA MRDAM K+G D  KINPL+PVDLVIDHSV VD   SG
Sbjct:   33 DLPLKKLPYSLRVLFENVLRTGS-----KQNLMVFKEWLKNKKSDAEIDFMPARVLMQDFTGVPAIVDLAAMRDAMKKIGGDPLKINPLIPVDLVIDHSVSVDSYASG 135          

HSP 2 Score: 72.4034 bits (176), Expect = 1.396e-40
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 3
Query:  597 NMEFEFQRNKERFAFLKWGSSAFHNMAGVPPGSGIVHQVNLEYLGRVVLITTGMANP 767
            N+  E +RN ER+ FLKWG  AF+N   VPPG+GI HQVNLEYL +VV  + G+A P
Sbjct:  141 NVAMEMRRNIERYQFLKWGQQAFNNFKVVPPGTGICHQVNLEYLAKVVWHSNGVAYP 197          
BLAST of DY259823 vs. ExPASy Swiss-Prot
Match: ACON_RICFE (Aconitate hydratase OS=Rickettsia felis GN=acnA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.024e-40
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query:  266 IEKLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 565
            ++KLPYS+R+L E+ +R+  +    K+++    +W  +     EI F PARVL+QDFTGVPA+VDLA MRDAM K+G D  KINPL+PVDLVIDHSV VD
Sbjct:   36 LKKLPYSLRVLFENVLRSNGS----KQNLLVFKEWLKTKESDAEIDFMPARVLMQDFTGVPAIVDLAAMRDAMKKIGGDPLKINPLIPVDLVIDHSVSVD 131          

HSP 2 Score: 72.7886 bits (177), Expect = 4.024e-40
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 3
Query:  597 NMEFEFQRNKERFAFLKWGSSAFHNMAGVPPGSGIVHQVNLEYLGRVVLITTGMANP 767
            N++ E +RN ER+ FLKWG  AF+N   VPPG+GI HQVNLEYL +VV    G+A P
Sbjct:  142 NVQMEMKRNIERYQFLKWGQQAFNNFKVVPPGTGICHQVNLEYLAKVVWHKDGLAYP 198          
BLAST of DY259823 vs. ExPASy Swiss-Prot
Match: ACON_RICCN (Aconitate hydratase OS=Rickettsia conorii GN=acnA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.831e-40
Identity = 57/103 (55.34%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  257 DPRIEKLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 565
            D  ++KLPYS+R+L E+ +R+  +    K+ +    +W  +     EI F PARVL+QDFTGVPA+VDLA MRDAM K+G D  KINPL+PVDLVIDHSV VD
Sbjct:   33 DLPLKKLPYSLRVLFENVLRSNGS----KQSLLVFKEWLKTKKSDAEIDFMPARVLMQDFTGVPAIVDLAAMRDAMKKIGGDPLKINPLIPVDLVIDHSVSVD 131          

HSP 2 Score: 72.0182 bits (175), Expect = 6.831e-40
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 3
Query:  579 ENAVKANMEFEFQRNKERFAFLKWGSSAFHNMAGVPPGSGIVHQVNLEYLGRVVLITTGMANP 767
            +++   N++ E +RN ER+AFLKWG  AF+N   VPPG+GI HQVNLEYL +VV    G   P
Sbjct:  136 KDSFNKNVQMEMKRNIERYAFLKWGQQAFNNFKVVPPGTGICHQVNLEYLAKVVWHKDGTLYP 198          
BLAST of DY259823 vs. ExPASy Swiss-Prot
Match: ACON_RICPR (Aconitate hydratase OS=Rickettsia prowazekii GN=acnA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.160e-39
Identity = 58/100 (58.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query:  266 IEKLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 565
            ++KLPYS+R+LLE+ +R   N    KE++    +W  +     EI F PARVL+QDFTGVPA+VDLA MRDAM K+G +  KINPL+PVDLVIDHSV VD
Sbjct:   36 LKKLPYSLRVLLENVLRTNGN----KENLLVFKEWLKTKKSNTEIDFMPARVLMQDFTGVPAIVDLAAMRDAMQKIGCNPLKINPLIPVDLVIDHSVSVD 131          

HSP 2 Score: 69.3218 bits (168), Expect = 1.160e-39
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 3
Query:  597 NMEFEFQRNKERFAFLKWGSSAFHNMAGVPPGSGIVHQVNLEYLGRVVLITTGMANP 767
            N+  E +RN ER+ FLKWG  AF+N   VPPG+GI HQVNLE+L +VV    G A P
Sbjct:  142 NVHMEMKRNIERYQFLKWGQQAFNNFKVVPPGTGICHQVNLEFLSQVVWHNDGTAYP 198          
BLAST of DY259823 vs. ExPASy Swiss-Prot
Match: ACON_MYCAV (Aconitate hydratase OS=Mycobacterium avium GN=acn PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.380e-39
Identity = 58/118 (49.15%), Postives = 80/118 (67.80%), Query Frame = 2
Query:  215 GGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDV 568
            G +  + Y L A+  P  EKLPYS+++L E+ +RN D   + K+ IE I +W+  A   +EI + PARV++QDFTGVP +VDLA MR+A+  LG +  K+NPL P DLVIDHSV  D+
Sbjct:   44 GDKSYQIYRLDAV--PNTEKLPYSLKVLAENLLRNEDGSNITKDHIEAIANWDPKAGASIEIQYTPARVVMQDFTGVPCIVDLATMREAIADLGGNPEKVNPLAPADLVIDHSVIADL 159          

HSP 2 Score: 63.929 bits (154), Expect = 7.380e-39
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  582 NAVKANMEFEFQRNKERFAFLKWGSSAFHNMAGVPPGSGIVHQVNLEYLGRVVLITTGMANP 767
            +A + N+E E+QRN ER+ FL+W   AF +   VPP   IVHQVN+EYL RVV+   G+A P
Sbjct:  164 DAFERNVEIEYQRNGERYQFLRWLQGAFSDFKVVPP-RRIVHQVNIEYLARVVMERVGVAYP 224          
BLAST of DY259823 vs. ExPASy Swiss-Prot
Match: IREB2_MOUSE (Iron-responsive element-binding protein 2 OS=Mus musculus GN=Ireb2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.648e-32
Identity = 65/137 (47.45%), Postives = 95/137 (69.34%), Query Frame = 2
Query:  164 AAEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 574
            +A + F+ ++  L    G    KF+++P L   + + LPYSIR+LLE+A+RNCD F +KKED+  I+DW+      VE+PF PARV+LQDFTG+PA+VD A MR+A+  LG D  K++P  P DL +DHS+Q+D ++
Sbjct:    5 SAGYTFEYLIETL---NGNSQKKFFNVPKLGGTKYDILPYSIRVLLEAAVRNCDGFLMKKEDVMNILDWKTKQ-SNVEVPFFPARVVLQDFTGIPAMVDFAAMREAVKTLGGDPKKVHPACPTDLTVDHSLQIDFSK 137          

HSP 2 Score: 72.7886 bits (177), Expect = 3.044e-12
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = 3
Query:  588 VKANMEFEFQRNKERFAFLKWGSSAFHNMAGVPPGSGIVHQVNLEYLGRVVLITTGMANP 767
            V  N E EF RN+ER  F KW S AF N+A +PPG+G+ HQVNLEYL RVV   T +  P
Sbjct:  215 VLKNQEVEFGRNRERLQFFKWSSGAFKNVAVIPPGTGMAHQVNLEYLSRVVFEETDLLFP 274          
The following BLAST results are available for this feature:
BLAST of DY259823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ACON_STAAM5.378e-4153.78Aconitate hydratase OS=Staphylococcus aureus (stra... [more]
ACON_STAAC5.378e-4153.78Aconitate hydratase OS=Staphylococcus aureus (stra... [more]
ACON_RICTY6.314e-4158.00Aconitate hydratase OS=Rickettsia typhi GN=acnA PE... [more]
ACON_STRMU8.225e-4158.25Aconitate hydratase OS=Streptococcus mutans GN=acn... [more]
ACON_RICBR1.396e-4054.63Aconitate hydratase OS=Rickettsia bellii (strain R... [more]
ACON_RICFE4.024e-4056.00Aconitate hydratase OS=Rickettsia felis GN=acnA PE... [more]
ACON_RICCN6.831e-4055.34Aconitate hydratase OS=Rickettsia conorii GN=acnA ... [more]
ACON_RICPR1.160e-3958.00Aconitate hydratase OS=Rickettsia prowazekii GN=ac... [more]
ACON_MYCAV7.380e-3949.15Aconitate hydratase OS=Mycobacterium avium GN=acn ... [more]
IREB2_MOUSE2.648e-3247.45Iron-responsive element-binding protein 2 OS=Mus m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YE23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259823 ID=DY259823; Name=DY259823; organism=Citrus clementina; type=EST; length=902bp
CTCTCAGCGATCTCTCGGCTTCGCCTCGGCCGTTCGATCCTTCCGCTGCT
CCGTCCCTCGCTGGAGCCACCGCGTTGACTGGCGCTCTCCGCTTAGTCTT
CGCGCTCAGATCAGAACCGTTGCTCCTGCCATCGAACGGCTCGAACGCGC
CTTTGCTACTATGGCTGCTGAACATCCATTCAAGGAGATCTTGACCGCTC
TTCCAAAGCCAGGAGGTGGCGAGTTTGGAAAGTTCTATAGCCTTCCTGCA
CTCAATGATCCAAGAATTGAGAAGCTGCCATACTCTATCAGAATCCTGCT
TGAATCTGCTATTCGTAATTGTGACAACTTTCAAGTTAAGAAGGAAGATA
TCGAGAAAATTATTGACTGGGAAAATTCTGCACCAAAGCAAGTTGAAATT
CCCTTCAAGCCTGCTCGTGTATTGTTGCAGGATTTTACTGGAGTACCAGC
CGTGGTTGACCTTGCCTGCATGCGTGATGCTATGAACAAGCTTGGCAGTG
ATTCCAACAAGATCAATCCTCTTGTTCCTGTAGATCTTGTCATTGATCAT
TCGGTTCAGGTTGATGTAACAAGATCGGGAAAATGCAGTTAAGGCAAATA
TGGAATTTGAATTTCAGAGGAACAAGGAGAGATTCGCTTTCCTCAAATGG
GGATCTAGTGCTTTCCATAACATGGCTGGTGTTCCTCCTGGTTCTGGTAT
TGTGCATCAGGTCAATCTTGAATATCTGGGACGGGTTGTTTTAATAACAA
CCGGCATGGCAAACCCCCGACAGGGTGGTTGGCATCGATTCCCCAACACC
ATGAATTTGAGGGGTTGGGAGTTCCCAGGCGCGAGGGTTGGAGGTAAAAA
AGACAACAGGCTCCACTGCCAGCTCACCCTACTAAACTTGGGATGTCTGG
AT
back to top