DY259824

Overview
NameDY259824
Unique NameDY259824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1001
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259824 vs. ExPASy Swiss-Prot
Match: VATL_CANTR (V-type proton ATPase 16 kDa proteolipid subunit OS=Candida tropicalis GN=VMA3 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.649e-17
Identity = 46/125 (36.80%), Postives = 82/125 (65.60%), Query Frame = 2
Query:  200 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIITTGINPRAKSYYLFDGYAHLSSGLACGPAGLYVGRVRELFVMPVLRLSSKSPPLFMYIAVNVSFVLKGLNFYGI 574
            +C GA+YGTAKSGVG+ +  V RP+L++K++VPVVMAG++ IYGL+++V+++  ++ +     L+ G+  L +GL+ G +GL  G    +     +R +++ P LF+ + + + F  + L  YG+
Sbjct:   24 TCFGASYGTAKSGVGICATSVTRPDLLVKNVVPVVMAGIIAIYGLVVSVLVSDSLSQKQA---LYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFA-EVLGLYGL 144          
BLAST of DY259824 vs. ExPASy Swiss-Prot
Match: VATL1_YEAST (V-type proton ATPase subunit c OS=Saccharomyces cerevisiae GN=VMA3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.798e-17
Identity = 48/123 (39.02%), Postives = 79/123 (64.23%), Query Frame = 2
Query:  206 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIITTGINPRAKSYYLFDGYAHLSSGLACGPAGLYVGRVRELFVMPVLRLSSKSPPLFMYIAVNVSFVLKGLNFYGI 574
            +GAAYGTAKSGVG+ +  V+RP+L+ K+IVPV+MAG++ IYGL+++V++   +  +     L+ G+  L +GL+ G +GL  G    +     +R SS+ P LF+ + + + F  + L  YG+
Sbjct:   26 LGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQA---LYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFA-EVLGLYGL 144          
BLAST of DY259824 vs. ExPASy Swiss-Prot
Match: VATL_ENTDI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba dispar GN=VMA3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.266e-17
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 2
Query:  209 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIITTGINPRAKSYYLFDGYAHLSSGLACGPAGLYVGRVRELFVMPVLRLSSKSPPLFMYIAVNVSFVLKGLNFYG 571
            G AYGTAKS VG++S+GVM+PE +M+S+ PVV AGV+G+YGLI+ +++   IN     Y L   +  L +GL CG  GL  G    +     +R +++ P LF+ + + + F  + L  YG
Sbjct:   34 GGAYGTAKSSVGISSVGVMKPEFIMRSLFPVVFAGVIGLYGLIVCIVLF--INVNKSEYSLNRAFLDLGAGLTCGLCGLASGMSIGISGDCGVRGAAQQPKLFVSMLICLIF-SEALALYG 151          
BLAST of DY259824 vs. ExPASy Swiss-Prot
Match: VATL_ENTHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba histolytica GN=VMA3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.823e-16
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 2
Query:  209 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIITTGINPRAKSYYLFDGYAHLSSGLACGPAGLYVGRVRELFVMPVLRLSSKSPPLFMYIAVNVSFVLKGLNFYG 571
            G AYGTAKS VG++S+GVM+PE +++S+ PVV AG++G+YGLI+ +++   IN     Y L   +  L +GL CG  GL  G    +     +R +++ P LF+ + + + F  + L  YG
Sbjct:   36 GGAYGTAKSSVGISSVGVMKPEFIVRSVAPVVFAGIIGLYGLIVCILLF--INVTKSEYSLNRAFLDLGAGLTCGLCGLASGMAIGISGDCGVRGAAQQPKLFVGMLICLIF-SEALALYG 153          
The following BLAST results are available for this feature:
BLAST of DY259824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_CANTR1.649e-1736.80V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL1_YEAST4.798e-1739.02V-type proton ATPase subunit c OS=Saccharomyces ce... [more]
VATL_ENTDI6.266e-1740.50V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ENTHI1.823e-1638.84V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YE24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259824 ID=DY259824; Name=DY259824; organism=Citrus clementina; type=EST; length=1001bp
CTCACGAGAGACAATTTAATCAAAGCTAATCGGGAGCAGAATTCTGTGCT
ATCCGGGAATTACTTAAAACTTGCGATTACGACTACTCAGATCTTCGTAG
CAAACAGGCAAAATCATCATCGCCATGTCATCGACTTTCTCCGGCGACGA
AACTGCTCCCTTCTTCGGCTTCCTTGGAGCAGCGGCCGCTCTCGTCTTCT
CCTGTATGGGTGCTGCCTATGGGACAGCAAAGAGTGGGGTTGGAGTGGCT
TCAATGGGTGTCATGAGGCCGGAGCTTGTTATGAAATCGATTGTTCCAGT
GGTTATGGCTGGAGTTTTGGGTATTTATGGGTTGATTATTGCTGTTATTA
TTACTACTGGGATCAACCCTAGAGCTAAGTCTTATTATTTGTTTGATGGG
TATGCACATTTGTCTTCGGGGCTTGCTTGTGGTCCGGCCGGACTCTACGT
CGGTAGGGTTCGGGAATTGTTCGTGATGCCTGTTCTACGCCTCTCGTCTA
AAAGCCCACCTCTGTTTATGTACATAGCTGTGAATGTTTCTTTTGTGCTC
AAAGGCCTTAATTTCTACGGTATTTAGGAAATCAATCCGAGGTATCCACT
TGTAAAGATGAACTGCTTGTAAGAAACAAACACCAAGCCTACAGGGACCC
ACCTGTCCGACTCATTCCCCCCACTCTAGTTCCGCAATTCTGTCTCTTTG
CGCATATTCGGCAATCTGAAGCAATTGGCCCAACACGGCGGTTGCCGAGC
CGCCGCGGCCCTGGCCTACCGCGCCCATTCCATCACTCACCTAGAGTACA
CTCCACCTTCACACCTTTCCCTCGTTAACCATCTAAATCTTTAAAAATAT
CACTTACACATCAGTAAATTTGGGATGGGTACTTCACTAGAACTGTTCTC
TATCCATCCATCTCTCTTTTTAACTTCCCTCTCATCTTATGGTTTTCTAG
CCTATCCTGTAAGTCTACATATGATACTGCGATTCCATATTCAATCGCGA
T
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