DY259829

Overview
NameDY259829
Unique NameDY259829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1092
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259829 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.510e-38
Identity = 90/228 (39.47%), Postives = 133/228 (58.33%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIK-DGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITISDPILMHHFAITENYAIFMDLPLYFRPKEMVNKNNSIFTFKETKKPPFGFL 678
            P+AG+H FDGDGMIH + I  D + +Y  R+ +T+RL QE   G + F K IG+L G  GL  + +   RA + ++D + G G AN  +V+ +G+LLA+SE D PY VK+   GDL+T+G   +D ++  S  AHPKVD  TG++ T  Y     P++ Y   +  G     V IT+ +P ++H FAITEN+ +  D  + F+  EM+   + +   KE K   FG L
Sbjct:  142 PLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLETIGRFGFDDQIDSSVIAHPKVDATTGDLHTLSYNVLKKPHLRYLKFNTCGKKTRDVEITLPEPTMIHDFAITENFVVIPDQQMVFKLSEMIRGGSPVIYVKE-KMARFGVL 368          
BLAST of DY259829 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.007e-36
Identity = 88/233 (37.77%), Postives = 125/233 (53.65%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSY----GNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPI-TISDPILMHHFAITENYAIFMDLPLYFRPK--EMVNKNNSIFTFKETKKPPFGFLP 681
            P   YH FDGDGM+H ++I +GKAT  SR+V+T +   E+  G      +    G  G+     +      +VL   Y    G G ANT+L +   +L AL E+D PYAV++ E GD++T+G  D+D +L  S TAHPK DP TGE F F Y   PP++TY      G     VPI +++ P  +H FAIT+ +AIF ++ L  R    ++V +  S       K P  G +P
Sbjct:  153 PRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNV--FSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETIGRYDFDGKLAMSMTAHPKTDPITGETFAFRYGPVPPFLTYFRFDSAGKKQRDVPIFSMTSPSFLHDFAITKRHAIFAEIQLGMRMNMLDLVLEGGSPVGTDNGKTPRLGVIP 383          
BLAST of DY259829 vs. ExPASy Swiss-Prot
Match: ZCD_CROSA (Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.209e-24
Identity = 69/161 (42.86%), Postives = 94/161 (58.39%), Query Frame = 1
Query:  223 LDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVL-EDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDP-VPI-TISDPILMHHFAITENYAIFMDLPLYFRPKEMVNKNNSIFTFKETKKPPFGFLPPMQTN 696
            +D + G G ANT+L + +G+L AL E D PY V++  EDGD+ T+G I+ +   + S TAHPK DP TGE F+F Y    PY+TY     DG    P VPI +  +P  +H FAITE+YA+F D+ +  +P E+V     I    E K P  G LP   T+
Sbjct:    3 VDPTKGIGLANTSLQFSNGRLHALCEYDLPYVVRLSPEDGDISTVGRIENNVSTK-STTAHPKTDPVTGETFSFSYGPIQPYVTYSRYDCDGKKSGPDVPIFSFKEPSFVHDFAITEHYAVFPDIQIVMKPAEIVRGRRMIGPDLE-KVPRLGLLPRYATS 161          
The following BLAST results are available for this feature:
BLAST of DY259829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NCED6_ARATH2.510e-3839.479-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
CCD4_ARATH4.007e-3637.77Probable carotenoid cleavage dioxygenase 4, chloro... [more]
ZCD_CROSA1.209e-2442.86Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259829 ID=DY259829; Name=DY259829; organism=Citrus clementina; type=EST; length=1092bp
GCCCCTGTGGCCGGATACCACTGGTTTGATGGAGATGGCATGATTCATGG
TCTGCGCATCAAAGACGGAAAGGCTACATATGTCTCCCGTTTTGTGAGGA
CTTCACGTCTTAAACAGGAAGAATTTTTTGGAGGTGCTAAATTTATGAAG
ATTGGAGACCTTAAGGGGCTATTTGGATTACTCATGGTTAACATGCAAAT
GCTTAGAGCAAAGTTGAAAGTACTGGATGTTTCATATGGAAATGGGACAG
CTAATACAGCTCTTGTATATCACCATGGGAAACTTCTAGCACTCTCAGAG
GCGGACAAACCATATGCCGTCAAAGTTCTGGAAGATGGAGATCTGCAAAC
ACTTGGTATGATTGACTATGACAAGAGATTACAACATTCCTTTACTGCCC
ATCCAAAGGTTGATCCATACACTGGCGAGATGTTTACCTTTGGCTATGCA
CACACACCACCATATATCACATACAGAGTTATTTCAAAGGATGGTTTCAT
GCATGATCCTGTACCAATAACCATATCAGACCCCATCTTGATGCACCACT
TTGCTATTACTGAGAATTATGCTATTTTCATGGATCTTCCCCTGTATTTC
AGACCAAAAGAAATGGTGAACAAAAACAACTCGATATTCACTTTTAAAGA
AACAAAAAAACCCCCTTTTGGTTTCCTTCCCCCAATGCAAACAAATAGGG
CCAACTGAAAGGGTTTGAACTCTCACAATTCCTTACACTCCCAAAACCCC
AAGCTTGCGAAGCGGCCGATTACTGCGTTTTCAATCTTTTCCGCCATTTC
ACAGCGGATCCAAATACTTCCCTATGCCCCTCTCTACTCACCCCCCACAC
CTTCCCCCCACTAACTCCCCGCAACTCCACCCCCTCCCCAATCACGCTCC
CCCCCACCCAACCACAATACCACACACCCTCAACATCCATCTCCTATCTA
CACCAAGATACCAAACAATGCACCAACACAATCAATCTCGACATAACACA
ATTTCCCCATCACAATAACCCATCCATATGCCTTCCACTCCCAACATTCT
TCCTTGCTCCACCTTCCACCTCCCTATACCCCCCTCTCTCGC
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