DY259837

Overview
NameDY259837
Unique NameDY259837
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length942
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_UREPA (Prolyl-tRNA synthetase OS=Ureaplasma parvum GN=proS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.950e-25
Identity = 76/252 (30.16%), Postives = 126/252 (50.00%), Query Frame = 2
Query:    2 ELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANM------DSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKM 739
            ++Y    + +L +PVIKG K+  E+FAG   T T+EA + + G+ +Q ATSH LGQ F+K ++I F+ +  +     Q S   +TR IG ++MVH DD+GL+L               +       IF      +  + +  IC  +      +   +   G+K +  E++G P+ I +G K+L   QV  VRRD   K+++  + L   I +LL +I+ ++   AK+  +  I  V    E  + + Q KM
Sbjct:  181 DVYTDFVQNYLCIPVIKGLKTPWERFAGAQKTYTIEAMMQD-GQALQSATSHYLGQFFAKAYDIKFQGQDNQMHYVHQMSAGLSTRIIGALIMVHADDQGLIL----------PPDIAFNQIAILTIFSNKNPQLLKISQQ-ICEQLNNYRLFEDHSDKGIGYKLAQQEIEGTPICILVGAKELVNQQVVIVRRDTHEKINVDLTDLKLIIPKLLADIKRNIYEKAKKDLEDSIVFVNNIEELKQVIAQNKM 420          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_UREP2 (Prolyl-tRNA synthetase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=proS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.950e-25
Identity = 76/252 (30.16%), Postives = 126/252 (50.00%), Query Frame = 2
Query:    2 ELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANM------DSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKM 739
            ++Y    + +L +PVIKG K+  E+FAG   T T+EA + + G+ +Q ATSH LGQ F+K ++I F+ +  +     Q S   +TR IG ++MVH DD+GL+L               +       IF      +  + +  IC  +      +   +   G+K +  E++G P+ I +G K+L   QV  VRRD   K+++  + L   I +LL +I+ ++   AK+  +  I  V    E  + + Q KM
Sbjct:  181 DVYTDFVQNYLCIPVIKGLKTPWERFAGAQKTYTIEAMMQD-GQALQSATSHYLGQFFAKAYDIKFQGQDNQMHYVHQMSAGLSTRIIGALIMVHADDQGLIL----------PPDIAFNQIAILTIFSNKNPQLLKISQQ-ICEQLNNYRLFEDHSDKGIGYKLAQQEIEGTPICILVGAKELVNQQVVIVRRDTHEKINVDLTDLKLIIPKLLADIKRNIYEKAKKDLEDSIVFVNNIEELKQVIAQNKM 420          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_SPHEL (Prolyl-tRNA synthetase OS=Sphingomonas elodea GN=proS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.676e-25
Identity = 73/240 (30.42%), Postives = 119/240 (49.58%), Query Frame = 2
Query:    2 ELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCE-----AGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVD-------LPRSSLVERIKELLDEIQESLVVAAKQRRDACI 685
            E+YR   E  LA+PV+ G+K E E+F G + T ++EA + + G+ +Q  TSH LG  FS   +I F+N +G+  +A   SW  +TR IG ++MVHGDD GL +                   +     D C +    L +       + A +D +   +   ++  W  KG P+ IE+G +D+A   V  ++R+   + D       +PR   V     +L+ IQ+ L + A++R D+ I
Sbjct:  192 EVYRDFAETCLAMPVVAGEKPENERFPGAVSTFSIEAMMQD-GKALQAGTSHFLGTTFSSAQDIKFQNSEGQFELAQTTSWGVSTRMIGGLIMVHGDDDGLRVPPMVAPWQIVIVPMLRDQPEDAATIDYCKSLQAELAKLTALGEPVRALLDLKAVKAQTKRWG-WVKKGAPIVIEVGGRDVAGGNVSVIQRNKLYREDGKLDSRIMPRGDFVAEAAAILESIQQGLYLDARERLDSNI 429          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_MYCPE (Prolyl-tRNA synthetase OS=Mycoplasma penetrans GN=proS PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.677e-24
Identity = 74/264 (28.03%), Postives = 132/264 (50.00%), Query Frame = 2
Query:    8 YRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVER-IKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKMILTPWC**GDVEKEVKRRT 796
            Y++   ++L++ V+ G+K+E E+FAG   T T+EA +P+ G+ +Q ATSH LG NF+K +++ ++ +     + +Q S   +TR IG ++M H D+ GLVL                 + D+    D   A  + L           +   S G +    E+KG+P ++ +G K++  N +   RRD   K ++      +  I+ L+ E   +L    ++R ++ I  V   +EF +AL  +K+I   W    + EK++K  T
Sbjct:  179 YKKFVNDYLSIAVLMGEKTENERFAGADNTFTIEALMPD-GQVLQSATSHYLGTNFAKSYDLKYQTKNNNYDLMFQTSAGLSTRIIGAIIMSHSDNNGLVLPFKIAPIQFAIVTSNEVNKDS----DELKAIYKNLFGYKYQTYFVEK---SLGLQLQENEIKGIPFQLILGKKEIENNTITIYRRDTREKQNISFKEFNQNFIENLIKEYSSNLFNKTEKRLNSSIEFVNNIDEFKKALDNKKIISAYWSGNAEDEKKLKELT 434          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_MYCGA (Prolyl-tRNA synthetase OS=Mycoplasma gallisepticum GN=proS PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.677e-24
Identity = 74/265 (27.92%), Postives = 128/265 (48.30%), Query Frame = 2
Query:    2 ELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKMILTPWC**GDVEKEVKRRT 796
            +LY+R  ++ L +P++ G+K+E EKFAG   T TVE  +P+ G+ +Q ATSH L QNFSK F+I ++ +  +    +  S   +TR IG ++M HGDD GLV                    DT    +A    +          +++   + S G    + +++G    + +GP DL KN++  + R    K  +    L ++++EL     + L   AK   +  +   +T+ EF + +   K +   +C     EK++K +T
Sbjct:  179 KLYQRFIKDILCIPLVAGEKTEAEKFAGAKTTYTVETIMPD-GQALQSATSHNLSQNFSKAFDIRYQTKNNDYQNVFSMSAGVSTRIIGAIIMTHGDDDGLVFPTKVAPYHISLNCIF---DDTNQELNAKLKELANKYSQKYRVHLNVNKD-STGEIIKNSQLRGDCCVLLMGPNDLKKNEIVFIDRITKQKQFINLDHLDQKLEELFSTFDQKLYQKAKAVFETKVDFAQTFEEFEQKIASGKFVRVFYCNEDLYEKQIKEKT 438          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_PICTO (Prolyl-tRNA synthetase OS=Picrophilus torridus GN=proS PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.397e-23
Identity = 67/244 (27.46%), Postives = 121/244 (49.59%), Query Frame = 2
Query:   26 EFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKMILTPWC 757
            E L +P     + + +KF G  YT   +  +P+ GR +Q  T H  G+NF++ ++I + +  G+     Q ++  + R +  ++ +HGDD GL+L                K    + + D     +  L +  + A +DSR+NY+PG+KY+ WEM+GVPLRIEIG +++  + V  V R N  ++++     +  IK +L+E  + L + A +  +     +   N     + +  +I   WC
Sbjct:  183 EKLCLPYNIDMRPDWDKFPGAKYTLAFDTLMPS-GRSLQIGTIHEYGENFARNYDIKYLDINGDLKYVSQTTFGLSERLLAAVIGIHGDDTGLILPASIAPVQAIIIPIPGKSF--KEVLDYSGKILSMLKDINVRAEIDSRENYTPGYKYNDWEMRGVPLRIEIGSREMESSTVTVVSRLNKKRLNISIKE-INNIKNMLNEHDKQLTLNAWKMMEENTVFIDDINNI--PMNKDVLIKAYWC 420          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_SPHAL (Prolyl-tRNA synthetase OS=Sphingopyxis alaskensis GN=proS PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.825e-23
Identity = 72/240 (30.00%), Postives = 120/240 (50.00%), Query Frame = 2
Query:    2 ELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDAC---TATVETLCEAG--ICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRD----NGAKVD---LPRSSLVERIKELLDEIQESLVVAAKQRRDACI 685
            E+YR   E+ LA+PVI G+K E E+F G + T ++EA + + G+ +Q  TSH LG  F++   I +++  G  ++    SW  +TR IG ++M HGDD GL                   + +   I D C    + ++ L   G  +   +D+  N +   ++  W  KG P+ +E+GP+D+A   V  +RRD       K++   + +   +      L++IQ SL   A++R DA I
Sbjct:  212 EMYRSFAEDVLAMPVIAGEKPENERFPGAVATYSIEAMMQD-GKALQAGTSHYLGTGFAEAAGIRYQDRDGGHSLCHTTSWGTSTRMIGGVIMTHGDDDGLRCPPRIAPHQIVIVPMLRDNGEDAAILDYCRDLESRLKALDAFGEPVRVLLDTGANKAQTKRWG-WVKKGAPIIVEVGPRDVAGGNVAVIRRDRLYQESGKLNSAFVAKGDFIADAAATLEDIQASLYAEARERLDANI 449          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_NOVAD (Prolyl-tRNA synthetase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=proS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.057e-23
Identity = 77/245 (31.43%), Postives = 117/245 (47.76%), Query Frame = 2
Query:    2 ELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICAN-----MDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRD------------NGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACI 685
            E+YR   E  LA+PVI G K E E+F G + T ++EA + + G+ +Q  TSH LG  F+K   I ++N++G++A+A   SW  +TR IG ++M HGDD GL +                 +     +   C     +L +  +        +D R   +   +++ W  KG+PL +EIG +D     V  +RRD              AK D   S+  E     L+ IQ +L   A+ RRDA I
Sbjct:  197 EMYRAFAEGPLAMPVIAGPKPENERFPGAVETFSIEAMMQD-GKALQAGTSHYLGTTFAKAAGIQYQNKEGQQALAHTTSWGVSTRLIGGVIMTHGDDDGLRVPPQVAPQQIVILPMLRDNEGDDALLAYCEEIRASLVKLSVFGERIRVLLDKRPGKATQKRWA-WVKKGMPLILEIGGRDAEGGLVSVLRRDRLWRQDAKPNFVGQAKDDFLASAATE-----LESIQAALYDEARARRDAQI 434          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_ERYLH (Prolyl-tRNA synthetase OS=Erythrobacter litoralis (strain HTCC2594) GN=proS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.231e-21
Identity = 69/239 (28.87%), Postives = 112/239 (46.86%), Query Frame = 2
Query:    2 ELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDAC-----TATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPR--------SSLVERIKELLDEIQESLVVAAKQRRDA 679
            E+YR   EE LA+PVI G+K E E+F G + T ++EA + + G+ +Q  TSH LG NFS+   I F++ +G +      SW  +TR IG ++M HGDD GL +                   +   +   C         E+     +   +D +   +   ++ +W  KG P+ IE+G +D+    V  +RRD     +  +        + L + I  +LD IQ  +   A+  R+A
Sbjct:  195 EVYRAHAEEDLALPVIAGEKPENERFPGAVETWSIEAMMQD-GKALQAGTSHYLGTNFSEAANIKFQDREGGEKYCHTTSWGVSTRMIGGVIMTHGDDDGLKVPPRIAPYQVVILPMLRDKPEDDALLAYCEDLRGKLITESAMGEPVRVLLDKKPGKAAAKRW-NWVRKGAPIVIEVGGRDMENGVVSLLRRDELWNEETGKPAFQAPTPAQLTDEIASMLDSIQAGMFGTAQTWRNA 431          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_NANEQ (Prolyl-tRNA synthetase OS=Nanoarchaeum equitans GN=proS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.354e-17
Identity = 59/176 (33.52%), Postives = 91/176 (51.70%), Query Frame = 2
Query:  230 WQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKMILTPWC 757
            WQ S+  + R  G  +   GDD GLV+                KD DT+ I    +  V  L +      +DS D  +PG+KY ++++ GVPLRI+IG K++  N +  VRRDN  K  +  + L E+I ++  E++E L   AK   +  +  VKT++E  EA+ Q K+   P+C
Sbjct:  317 WQTSYGISMRAFGGALYWLGDDLGLVMPYKIAPIQIVIIPILGKD-DTKVI--EYSKKVYELIKDKYRVYLDSDDTKTPGYKYYYYDLIGVPLRIDIGLKEVENNSITIVRRDNKKKYTISLNEL-EKIDQIFKEMEEDLKQKAKSFVNDMVVRVKTFDELKEAIEQNKIAKAPFC 488          
The following BLAST results are available for this feature:
BLAST of DY259837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
SYP_UREPA1.950e-2530.16Prolyl-tRNA synthetase OS=Ureaplasma parvum GN=pro... [more]
SYP_UREP21.950e-2530.16Prolyl-tRNA synthetase OS=Ureaplasma parvum serova... [more]
SYP_SPHEL9.676e-2530.42Prolyl-tRNA synthetase OS=Sphingomonas elodea GN=p... [more]
SYP_MYCPE3.677e-2428.03Prolyl-tRNA synthetase OS=Mycoplasma penetrans GN=... [more]
SYP_MYCGA3.677e-2427.92Prolyl-tRNA synthetase OS=Mycoplasma gallisepticum... [more]
SYP_PICTO1.397e-2327.46Prolyl-tRNA synthetase OS=Picrophilus torridus GN=... [more]
SYP_SPHAL1.825e-2330.00Prolyl-tRNA synthetase OS=Sphingopyxis alaskensis ... [more]
SYP_NOVAD9.057e-2331.43Prolyl-tRNA synthetase OS=Novosphingobium aromatic... [more]
SYP_ERYLH2.231e-2128.87Prolyl-tRNA synthetase OS=Erythrobacter litoralis ... [more]
SYP_NANEQ4.354e-1733.52Prolyl-tRNA synthetase OS=Nanoarchaeum equitans GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YF19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259837 ID=DY259837; Name=DY259837; organism=Citrus clementina; type=EST; length=942bp
GGAACTCTACAGACGTATTTATGAAGAATTCTTGGCTGTTCCTGTTATAA
AGGGTAAGAAGAGTGAGCTAGAAAAGTTTGCTGGTGGGCTTTACACAACG
ACCGTTGAGGCATTTATTCCGAACACTGGTCGTGGTATACAAGGTGCAAC
TTCTCATTGTTTGGGCCAAAACTTTTCAAAAATGTTTGAGATAATTTTTG
AAAATGAGAAGGGAGAGAAGGCTATGGCCTGGCAGAATTCTTGGGCCTAC
ACTACCCGAACAATTGGGGTTATGGTGATGGTCCATGGGGATGACAAAGG
CTTGGTGCTGCCACCTAGAGTTGCATCTGTGCAAGTGATTGTTGTTCCTG
TGCCTTACAAAGATGCTGATACTCAAGGAATTTTTGATGCCTGCACTGCA
ACTGTAGAAACATTGTGTGAGGCAGGTATTTGTGCTAATATGGACTCAAG
AGACAACTACTCACCTGGATGGAAGTACTCACACTGGGAAATGAAAGGTG
TTCCCCTTAGGATTGAAATAGGACCAAAAGACTTGGCAAAAAATCAGGTA
CGTGCTGTTCGCCGTGACAATGGAGCAAAAGTTGATCTGCCTAGGAGCTC
TTTGGTTGAGCGAATAAAAGAACTTCTTGATGAGATTCAAGAAAGCCTTG
TTGTTGCTGCAAAACAAAGACGGGATGCCTGCATTTCAATTGTAAAAACT
TGGAATGAATTTGTGGAGGCTCTTGGCCAAAGAAAAATGATCCTAACTCC
ATGGTGTTGATGAGGAGATGTGGAAAAAGAAGTGAAACGCCGAACCAAGG
GTGAAAAGGGACCACCTAGACCCTTTGTTCCCCCCTGTGAACACCAAATA
TCCCTGAAAGGTATCTTCCCCTTCTCCCCGGGAACCCCGCAAATAGGGTG
AATTACTTGTCCCGGGTTTTATTTTTTTGACACTTCCGCTTA
back to top