DY259837

Overview
NameDY259837
Unique NameDY259837
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length942
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_MYCPN (Prolyl-tRNA synthetase OS=Mycoplasma pneumoniae GN=proS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.354e-17
Identity = 78/297 (26.26%), Postives = 127/297 (42.76%), Query Frame = 2
Query:    2 ELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKMILTPWC**GDVEKEVKRRTKGEKGPPRPFVPPCEHQISLKGIFPFSPGTPQ 892
            +LY+ I    L +P   G KS  E+FAG   T TVE+ +P+ G+ +Q ATSH LGQ F+K F + F+N+  ++A+ +  S   +TR +G +++ H DD GLVL                K  DT+ +       V+TL E         +     G +    E+ G+P ++ +         V    R    K       L  R  EL+ +  +++   AK      +    T  +  +A   +K +L        +E+++K R        +  V  C  Q+    I PFS  + Q
Sbjct:  193 KLYQDIIVNQLCIPAFVGLKSPNERFAGAQNTWTVESIMPD-GQALQCATSHDLGQTFTKPFGLTFQNQANQQAIPYSFSCGISTRILGALLLTHSDDFGLVLPWKVAPIQVKLYLFD-KKGDTKTV--ELAQKVQTLLEQLAIRFQFIKVENQLGKQLGQGEVNGIPFQLIVD----NPQTVNIFNRLTRVKTAYSFEQLASRFVELVQQYHQAMYDKAKAVVQQKVVQATTLKQIEQAFNDKKAVLCAVRLTDTLEQQLKERY-------QVTVRCCLEQLQKPQICPFSGESAQ 474          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_MYCGE (Prolyl-tRNA synthetase OS=Mycoplasma genitalium GN=proS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.884e-14
Identity = 67/263 (25.48%), Postives = 113/263 (42.97%), Query Frame = 2
Query:    5 LYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKMILTPWC**GDVEKEVKRR 793
            LY+ +    L +P   G KSE EKFAG   T T+EA +P+ G+ +Q ATSH LG  F+K F I ++++  +K      S   +TR +G + + H DD GLVL                 D +      A    V+   E           N   G +    E++G+PL++ +      +  +    R    K  L  ++L      L++     +   A    +  ++ V+T  E  +A   +K +L      G++E+ +K +
Sbjct:  194 LYQDLIINKLCIPAFVGLKSESEKFAGAKNTWTIEAIMPD-GQSLQCATSHDLGDTFTKSFTISYQSKTNQKMTPSSFSCGMSTRILGAIFLTHSDDYGLVLPWYLASKQVKLYLF---DKNNNPKTRALAFLVKDFLEKLKIRFSFIEINNQLGKQLLKGEIEGIPLQMIVD----NEKTINIFNRLTRLKTSLTFANLQTEFVNLVNNYHTEMYRKANDLVEQKLARVQTLKEIEQAFKNKKAVLCTVKLTGELEQHLKTK 448          
The following BLAST results are available for this feature:
BLAST of DY259837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
SYP_MYCPN4.354e-1726.26Prolyl-tRNA synthetase OS=Mycoplasma pneumoniae GN... [more]
SYP_MYCGE5.884e-1425.48Prolyl-tRNA synthetase OS=Mycoplasma genitalium GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259837 ID=DY259837; Name=DY259837; organism=Citrus clementina; type=EST; length=942bp
GGAACTCTACAGACGTATTTATGAAGAATTCTTGGCTGTTCCTGTTATAA
AGGGTAAGAAGAGTGAGCTAGAAAAGTTTGCTGGTGGGCTTTACACAACG
ACCGTTGAGGCATTTATTCCGAACACTGGTCGTGGTATACAAGGTGCAAC
TTCTCATTGTTTGGGCCAAAACTTTTCAAAAATGTTTGAGATAATTTTTG
AAAATGAGAAGGGAGAGAAGGCTATGGCCTGGCAGAATTCTTGGGCCTAC
ACTACCCGAACAATTGGGGTTATGGTGATGGTCCATGGGGATGACAAAGG
CTTGGTGCTGCCACCTAGAGTTGCATCTGTGCAAGTGATTGTTGTTCCTG
TGCCTTACAAAGATGCTGATACTCAAGGAATTTTTGATGCCTGCACTGCA
ACTGTAGAAACATTGTGTGAGGCAGGTATTTGTGCTAATATGGACTCAAG
AGACAACTACTCACCTGGATGGAAGTACTCACACTGGGAAATGAAAGGTG
TTCCCCTTAGGATTGAAATAGGACCAAAAGACTTGGCAAAAAATCAGGTA
CGTGCTGTTCGCCGTGACAATGGAGCAAAAGTTGATCTGCCTAGGAGCTC
TTTGGTTGAGCGAATAAAAGAACTTCTTGATGAGATTCAAGAAAGCCTTG
TTGTTGCTGCAAAACAAAGACGGGATGCCTGCATTTCAATTGTAAAAACT
TGGAATGAATTTGTGGAGGCTCTTGGCCAAAGAAAAATGATCCTAACTCC
ATGGTGTTGATGAGGAGATGTGGAAAAAGAAGTGAAACGCCGAACCAAGG
GTGAAAAGGGACCACCTAGACCCTTTGTTCCCCCCTGTGAACACCAAATA
TCCCTGAAAGGTATCTTCCCCTTCTCCCCGGGAACCCCGCAAATAGGGTG
AATTACTTGTCCCGGGTTTTATTTTTTTGACACTTCCGCTTA
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