DY259837

Overview
NameDY259837
Unique NameDY259837
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length942
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_METMJ (Prolyl-tRNA synthetase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=proS PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.630e-35
Identity = 94/251 (37.45%), Postives = 132/251 (52.59%), Query Frame = 2
Query:    5 LYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKMILTPWC 757
            LYR  Y+  L VPVI  ++   +KF G  YT   +  +P+ G+ +Q  T H LG +FS+ + I +E+  GE+  A+Q  +  + R+I  +V VHGDDKGLVL                     + +  A     E L  AG    +D+RD   PG KY HWEM+GVPLR+E+GP+D+  N V AV R  G K  L R  +VE I  +L E  E L  AA+Q   A I+  +T  E  EA+ +  + +  WC
Sbjct:  183 LYREFYDT-LRVPVILSRRPAWDKFPGADYTIAADTIMPD-GKTLQIGTVHMLGDHFSRTYAITYEDANGEQQYAYQTCYGISERSIAAVVSVHGDDKGLVLPPEVAPLEVVIVPIIVGKRRDEVLASAAALEAE-LRGAGFAVKLDARD-MRPGAKYYHWEMRGVPLRVEVGPRDIDANTVVAVAR-TGKKTTLDRRGVVEGITSVLAEFGEDLSQAARQAMAARITAAETLEETAEAV-KSGVAVVHWC 427          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_HALMA (Prolyl-tRNA synthetase OS=Haloarcula marismortui GN=proS PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.630e-35
Identity = 83/261 (31.80%), Postives = 137/261 (52.49%), Query Frame = 2
Query:    8 YRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQR-KMILTPWC**GDVEKEVK 787
            Y R+YEE +A+P +KG+K   +KF G   TTT+E  +P+ G+ +Q ATSH LG +F + F+I + +   E+  A   SW  + R +G ++M H DD+GLVL                +D   + I  A     E L EA +   +D R++ +PG+KY+  E+ GVPLR+EIGP ++   +   V R +G    + R  + + + + LD +   L  +A++  +  I   ++  E +  +GQ    +   WC   D E+ +K
Sbjct:  186 YARLYEEVMAMPPLKGRKPPHDKFPGAHTTTTIETLMPD-GKTVQAATSHYLGTSFGEAFDITYADADEEENTAHTTSWGLSWRAMGALIMTHSDDQGLVLPPALAPDQVVVVPIWQEDNKDEVIDYAADLAAE-LDEADVRVELDDREHRNPGFKYNEHELHGVPLRVEIGPHEVEDGEATLVHRPDGETETVDRDGIADTVTDHLDTVHAKLYASAEETLEGEIREAESREEILGTIGQHGGYVKCGWCGDEDCEEPIK 444          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_FRAAA (Prolyl-tRNA synthetase OS=Frankia alni (strain ACN14a) GN=proS PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.047e-35
Identity = 87/251 (34.66%), Postives = 127/251 (50.60%), Query Frame = 2
Query:    2 ELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKMILTPW 754
            E+YR    + LA+PV  G K+  E+FAG   T T E  + + G+ +Q ATSH LGQNF++ F+I F    G K +AW  SW  +TR +G ++M HGDD GL +                   D + +          L +AG+   +D+R   S G + +  E+KG+P+R+E+GP+DLA   V  VRRD   K  +P +    R+  LLDE+Q  L   A   R++  + V T  +   A  Q      PW
Sbjct:  178 EVYRDFLTDVLAIPVFIGTKTRKERFAGATNTMTCEGMMGD-GKALQMATSHELGQNFARAFDIDFLGADGAKHLAWTTSWGSSTRMVGGLIMAHGDDNGLRIPPRLAPTQVVVLPVR----DDETVVAKAREIAAALTDAGLRVQVDARSGLSFGRRVTDAEIKGIPVRVEVGPRDLAAGNVTLVRRDTSVKAAVPLAEAAARVPALLDEVQAGLHAEALALRESRTADVTTVAD-AAAAAQTGFARIPW 422          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_UNCMA (Prolyl-tRNA synthetase OS=Uncultured methanogenic archaeon RC-I GN=proS PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.897e-35
Identity = 92/250 (36.80%), Postives = 129/250 (51.60%), Query Frame = 2
Query:   17 IYEEF---LAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKMILTPWC 757
            +Y EF   LAVP I  K+ E +KF G  YT   +  +P+ G+ +Q  T H LG  F+K ++I +E+EKGE+    Q  +  + R I  ++ +HGD+KGLVL               +K  D  G+ +AC    E L    I A +D  D   PG KY  WEMKG P RIEIGP+D+  N V  VRRD G K  +P   L E ++  L E Q  L+ AA+    A +   +T +E  + + +      PWC
Sbjct:  183 LYSEFFTKLAVPFIVHKRPEWDKFPGADYTMAFDTMMPD-GKSLQVGTVHHLGTKFAKTYDITYEDEKGERQYVNQTCYGISERCIAAVIGIHGDNKGLVLPPNASQTQVVIIPIIFK-KDDGGVKEACQKVKELLRANDIVAVIDDADE-RPGAKYYKWEMKGTPFRIEIGPRDIKNNSVMLVRRD-GKKESIPMDGLPETVRNKLFEFQTDLLNAARDSMLARVKACETLDEAKQQI-ENGWATMPWC 427          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_PYRAE (Prolyl-tRNA synthetase OS=Pyrobaculum aerophilum GN=proS PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.897e-35
Identity = 81/251 (32.27%), Postives = 132/251 (52.59%), Query Frame = 2
Query:    2 ELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKMILTPW 754
            E+Y+RI++E     +I  K+ E +KFAG  YT   +  +P+ GR +Q  T H LG NF+K+FE+ + +  G + +A   S+  + R+I  M++ HGDD G  L               Y + +   +      T   L EAGI   +D R + +PGWK+ +WE+KGVPLR+EIG +D+ K Q    RRD   K  +  + LV+ +K+L+  ++E+L   A +     +   +       A+ + K++  PW
Sbjct:  186 EIYKRIFDEMCLAYLIN-KRPEWDKFAGAEYTIAFDTILPD-GRSLQIGTVHYLGTNFTKVFEVTYLDADGTRKLAHTTSYGISERSIAAMLITHGDDGGTTLPPKLAPIQVVVIPIYYGEEEAPLVMPLVRETANRLNEAGIRVYVDERADKTPGWKFYYWELKGVPLRVEIGKRDVEKRQAVIARRDTLEKYAVSINELVDAVKQLMKSVEENLRKRAWEELKGRVVKAEDIEVAKAAIKEGKVVEIPW 434          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_FRASC (Prolyl-tRNA synthetase OS=Frankia sp. (strain CcI3) GN=proS PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.897e-35
Identity = 88/251 (35.06%), Postives = 128/251 (51.00%), Query Frame = 2
Query:    2 ELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKMILTPW 754
            E+YR    + LAVPV  G K+  E+FAG   T T E  + + G+ +Q ATSH LGQNF++ F+I F    G + +AW  SW  +TR +G ++M HGDD GL +                   D + +          L +AG+   +D+R   S G + +  E+KG+P+R+E+GP+DLA   V  VRRD   KV +P + +  R+  LL E+Q  L   A   R++  + V T  E   A  Q      PW
Sbjct:  178 EVYRDFMTQVLAVPVFVGVKTRRERFAGATNTMTCEGMMGD-GKALQMATSHELGQNFARAFDIDFLGADGARHLAWTTSWGCSTRMVGGLIMAHGDDNGLRVPPRLAPTQVVVLPVR----DEETVVAKARQIAAALTDAGLRVQVDARPGLSFGRRVTDAEIKGIPVRVEVGPRDLAAGNVTLVRRDTSEKVPVPLAEVATRVPVLLGEVQADLYAEALALRESRTTDVATVAEAARA-AQAGFARIPW 422          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_PYRKO (Prolyl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=proS PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.031e-34
Identity = 86/244 (35.25%), Postives = 129/244 (52.87%), Query Frame = 2
Query:   29 FLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKMIL-TPWC 757
            FLA+P I  K+ E +KF G  Y+   E  +P+ GR +Q  T H   QNF+K + I +E E G+     Q ++  + R +  ++ +HGDD+G+VL                KD++   +F       E L  AGI  ++D RD   PG KY  WE+KGVPLRIE+GP+D+   +    RRD   K+ + R ++VE +++ LD I E+L   AK+  ++ I  V T  E       R+ I+  PWC
Sbjct:  189 FLALPYIISKRPEWDKFPGAYYSLGAEVMMPD-GRTLQIGTMHNYRQNFAKAYNIQYETETGDHEYVHQTTFGMSERLLAAVIAIHGDDRGMVLPPTIAPIQVVIVPIPKKDSEAD-VFAYAREIAEELRTAGIRVHVDERD-IRPGRKYYDWELKGVPLRIEVGPRDVEGKKAVLARRDTLEKITVERDNIVEEVRKTLDAIHENLYQRAKEFLESHIKRVDTIEEAKAVFEDRRGIVEIPWC 429          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_PYRFU (Prolyl-tRNA synthetase OS=Pyrococcus furiosus GN=proS PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.031e-34
Identity = 83/243 (34.16%), Postives = 130/243 (53.50%), Query Frame = 2
Query:   32 LAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKMIL-TPWC 757
            LA+  +  K+ E +KF G  Y+   E  +P+ GR +Q  T H   QNF+K + I++E E G      Q ++  + R +  ++ +HGDD+G+VL                K ++ + ++       E L  AGI  ++D RD   PGWK+  WE+KGVP+RIE+GP+D A+  V   RRD   K+ + R  LV++++EL D+I + L   AK+  ++ I  V T  E  E    R+ I+  PWC
Sbjct:  189 LAIAYVISKRPEWDKFPGAYYSLGAEVVMPD-GRTLQIGTMHNYKQNFAKAYNILYEKEDGTHDYVHQTTFGMSERLLAAVIAIHGDDRGMVLPPTIAPIQVVIVPIPKKGSEEE-VYSYAREIEEELKLAGIRVHLDLRDK-RPGWKFYDWELKGVPVRIEVGPRDAAEKTVVLARRDKLEKITVSREELVDKVRELFDDIMQYLYERAKEWLESHIKRVDTIEEAKELFNDRRGIVEIPWC 428          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_AKKM8 (Prolyl-tRNA synthetase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=proS PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.031e-34
Identity = 103/297 (34.68%), Postives = 142/297 (47.81%), Query Frame = 2
Query:   14 RIYEEF----LAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDAC-----TATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGA--KVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEAL---GQRKMILTPWC**GDVEKEVKRRTK--------GEKGPPRPFVPPC 838
            ++YEEF    LA+P I G+K+E E+F G   T TVEA + +  + IQ  TSH LGQNFSK   I F      +  AW +SW  +TR IG ++M+H DD GLV                 K+   Q + D C     T   +T     +   +D RD    G K   W  KGVP+R+EIGP+DL K  V   RRD  A  K  +P + L++   ++L  IQ++L+  A   RD+ I    T  E  E     G    +  PW    + E+E+ +R +        GE G   P   PC
Sbjct:  197 KVYEEFQRDVLAIPTIPGEKTEAERFPGAEQTYTVEAMVQDR-KAIQAGTSHFLGQNFSKSQNICFAGRDNTQQFAWTSSWGVSTRMIGALIMMHSDDDGLVCPPRVAPQQIVIIPVTPKEESRQAVLDHCEELARTLRAKTFHGQPLRVLVDRRD-LGGGAKKWEWVKKGVPVRLEIGPRDLEKGSVCLQRRDRPANEKSFVPETELIDTAADILQSIQDTLLQRAIAFRDSHIRPASTLRELEENFSGEGDADWLQVPWDGSPEEEEELAKRLRISIRCIPLGELGRGEP--APC 489          
BLAST of DY259837 vs. ExPASy Swiss-Prot
Match: SYP_MYCPU (Prolyl-tRNA synthetase OS=Mycoplasma pulmonis GN=proS PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.759e-34
Identity = 85/264 (32.20%), Postives = 142/264 (53.79%), Query Frame = 2
Query:    8 YRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLVVAAKQRRDACISIVKTWNEFVEALGQRKMILTP-WC**GDVEKEVKRRT 796
            Y +   +FLA+P I GKK+  EKF+G   T T+EA + + G+ +Q  T+H L QNFS+ +++ F++ + +K   +Q SW  +TR IG ++M HGD++G+++                + +      +     VE + +     N+D  D  + G+K S  E++GVPLRIEIGP+D   NQV  VRRD   K  +  + +V+  +E L  I  +L   AK R    I  +  + EF + +   K +++P  C   + E+E+++ T
Sbjct:  182 YCKFLRKFLAIPTIMGKKTPREKFSGAYSTYTLEAMMKD-GKALQSGTTHYLAQNFSEAYDVNFKDSENKKQFVYQTSWGLSTRLIGAIIMTHGDNRGIIIPPFVAPCQIDILAFNPRRSAE---IEKFVNQVEKILKKPFRVNVDRSDK-TLGFKASQSEIQGVPLRIEIGPRDFENNQVTLVRRDTLEKQSVSINDIVKVSRETLQAIHNNLYEQAKIRLKNNIVEINDYEEFKQEIANHKFVISPLCCTTAEAEEEIQKET 440          
The following BLAST results are available for this feature:
BLAST of DY259837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
SYP_METMJ4.630e-3537.45Prolyl-tRNA synthetase OS=Methanoculleus marisnigr... [more]
SYP_HALMA4.630e-3531.80Prolyl-tRNA synthetase OS=Haloarcula marismortui G... [more]
SYP_FRAAA6.047e-3534.66Prolyl-tRNA synthetase OS=Frankia alni (strain ACN... [more]
SYP_UNCMA7.897e-3536.80Prolyl-tRNA synthetase OS=Uncultured methanogenic ... [more]
SYP_PYRAE7.897e-3532.27Prolyl-tRNA synthetase OS=Pyrobaculum aerophilum G... [more]
SYP_FRASC7.897e-3535.06Prolyl-tRNA synthetase OS=Frankia sp. (strain CcI3... [more]
SYP_PYRKO1.031e-3435.25Prolyl-tRNA synthetase OS=Pyrococcus kodakaraensis... [more]
SYP_PYRFU1.031e-3434.16Prolyl-tRNA synthetase OS=Pyrococcus furiosus GN=p... [more]
SYP_AKKM81.031e-3434.68Prolyl-tRNA synthetase OS=Akkermansia muciniphila ... [more]
SYP_MYCPU1.759e-3432.20Prolyl-tRNA synthetase OS=Mycoplasma pulmonis GN=p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259837 ID=DY259837; Name=DY259837; organism=Citrus clementina; type=EST; length=942bp
GGAACTCTACAGACGTATTTATGAAGAATTCTTGGCTGTTCCTGTTATAA
AGGGTAAGAAGAGTGAGCTAGAAAAGTTTGCTGGTGGGCTTTACACAACG
ACCGTTGAGGCATTTATTCCGAACACTGGTCGTGGTATACAAGGTGCAAC
TTCTCATTGTTTGGGCCAAAACTTTTCAAAAATGTTTGAGATAATTTTTG
AAAATGAGAAGGGAGAGAAGGCTATGGCCTGGCAGAATTCTTGGGCCTAC
ACTACCCGAACAATTGGGGTTATGGTGATGGTCCATGGGGATGACAAAGG
CTTGGTGCTGCCACCTAGAGTTGCATCTGTGCAAGTGATTGTTGTTCCTG
TGCCTTACAAAGATGCTGATACTCAAGGAATTTTTGATGCCTGCACTGCA
ACTGTAGAAACATTGTGTGAGGCAGGTATTTGTGCTAATATGGACTCAAG
AGACAACTACTCACCTGGATGGAAGTACTCACACTGGGAAATGAAAGGTG
TTCCCCTTAGGATTGAAATAGGACCAAAAGACTTGGCAAAAAATCAGGTA
CGTGCTGTTCGCCGTGACAATGGAGCAAAAGTTGATCTGCCTAGGAGCTC
TTTGGTTGAGCGAATAAAAGAACTTCTTGATGAGATTCAAGAAAGCCTTG
TTGTTGCTGCAAAACAAAGACGGGATGCCTGCATTTCAATTGTAAAAACT
TGGAATGAATTTGTGGAGGCTCTTGGCCAAAGAAAAATGATCCTAACTCC
ATGGTGTTGATGAGGAGATGTGGAAAAAGAAGTGAAACGCCGAACCAAGG
GTGAAAAGGGACCACCTAGACCCTTTGTTCCCCCCTGTGAACACCAAATA
TCCCTGAAAGGTATCTTCCCCTTCTCCCCGGGAACCCCGCAAATAGGGTG
AATTACTTGTCCCGGGTTTTATTTTTTTGACACTTCCGCTTA
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