DY259838

Overview
NameDY259838
Unique NameDY259838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1104
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14098 contig Ccv1_Contig14098:454..1557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.649e-45
Identity = 81/145 (55.86%), Postives = 107/145 (73.79%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD-------NAHQPLPANDF 414
            VVA  LL+ +TGG+    FAL+SGV  W+AV+ E  MTFGL+Y  YAT +DPK+G++GTIAP+A+GF++GAN+LAGG FDGA MNPA  FGPA+V W W +HWVYWLGPF+GA +A ++Y+++ I          AHQPL   D+
Sbjct:  120 VVATLLLRLTTGGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWLGPFVGAGLAGLLYEYLVIPSADAAPHGGAHQPLAPEDY 264          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.396e-44
Identity = 79/145 (54.48%), Postives = 109/145 (75.17%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD-------NAHQPLPANDF 414
            ++AC LL+ +T GL    F ++SGVS  + ++ EI++TF LVY VY+TA+DPK+G++G IAP+AIG IVGANIL GG FDGASMNPA +FGPA+V W W+NHW+YW+GPFIG A+AA++Y+++ I         + HQPL   D+
Sbjct:  123 ILACLLLRLATNGLRPVGFHVASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGSIGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALVGWRWSNHWIYWVGPFIGGALAALIYEYMIIPSVNEPPHHSTHQPLAPEDY 267          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.382e-44
Identity = 82/143 (57.34%), Postives = 104/143 (72.73%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFID-----DNAHQPLPANDF 414
            V A  LL+ +TGG     FAL+SGV   +AV+ E VMTFG VY  YAT VDPK+G+LGTIAP+A+GF++GAN+LAGG FDGA MNPA  FGPA+V W W +HWVYWLGPF+GA +A +VY+++ I       + HQPL   D+
Sbjct:  124 VAATLLLRLATGGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKRGHLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWLGPFLGAGLAGLVYEYLLIPPADAVPHTHQPLAPEDY 266          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.182e-43
Identity = 79/146 (54.11%), Postives = 107/146 (73.29%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFID--------DNAHQPLPANDF 414
            ++AC LL+ +T G+    F L+SGV + N +V EI++TFGLVY VY+T +DPK+G+LG IAP+AIG IVGANIL GG F GASMNPA +FGPA+V W W +HW+YW+GPFIG+A+AA++Y+++ I            HQPL   D+
Sbjct:  123 ILACLLLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGSLGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGWRWHDHWIYWVGPFIGSALAALIYEYMVIPTEPPTHHAHGVHQPLAPEDY 268          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 1.001e-42
Identity = 80/136 (58.82%), Postives = 102/136 (75.00%), Query Frame = 1
Query:    7 ACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF 414
            ACFLLK+ TGGL     ++++G+ S   VV EI++TF LVYTVYATA DPKKG+LGTIAP+AIG IVGANILA G F G SMNPA SFGPAV +  ++ HWVYW+GP IG  +A ++Y ++F+  + H PL + DF
Sbjct:  115 ACFLLKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIGGGLAGLIYGNVFMGSSEHVPLASADF 250          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 7.171e-41
Identity = 81/136 (59.56%), Postives = 98/136 (72.06%), Query Frame = 1
Query:    4 VACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPAND 411
            VAC LLKF T GL      +++G+ +   VV EI++TF LVYTVYATA DPKKG+LG IAPIAIGFIVGANILA G F G SMNPA SFGPAV S  ++ +W+YW GP IG A+A  +Y  +FI   AH PLP ++
Sbjct:  114 VACLLLKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGDFSQNWIYWAGPLIGGALAGFIYGDVFI--TAHAPLPTSE 247          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 9.366e-41
Identity = 76/131 (58.02%), Postives = 98/131 (74.81%), Query Frame = 1
Query:    7 ACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPL 399
            ACFLL + TGG+ T    L+SGVS    +++EI++TF L++TVYAT VDPKKG+L    P+  GF+VGANILAGGAF GASMNPA SFGPA+VS  WT+HWVYW+GP IG  +A  +Y+++ I D  H P+
Sbjct:  111 ACFLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFIYENVLI-DRPHVPV 240          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.223e-40
Identity = 79/136 (58.09%), Postives = 99/136 (72.79%), Query Frame = 1
Query:    4 VACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPAND 411
            VAC LLK+ T GL      +++G++ +  VV EI++TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G SMNPA SFGPAVV+  ++ +W+YW GP IG  +A  +Y  +FI    H PLP ++
Sbjct:  114 VACLLLKYVTNGLAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFI--GCHTPLPTSE 247          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.725e-40
Identity = 79/136 (58.09%), Postives = 98/136 (72.06%), Query Frame = 1
Query:    4 VACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPAND 411
            VAC LLK+ T GL      +++G++    VV EI++TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G SMNPA SFGPAVV+  ++ +W+YW GP IG  +A  +Y  +FI    H PLP ++
Sbjct:  114 VACLLLKYVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFI--GCHTPLPTSE 247          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.013e-39
Identity = 73/142 (51.41%), Postives = 100/142 (70.42%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFI----DDNAHQPLPANDF 414
            +VA  +L+  T  +  S F +S GV   +  + E+VMTFGL+YTVY TA+DPK+G +  IAP+AIG IVGANIL GG FDGA MNPA++FGP++V W W  HW++W+GP +GAA+AA+VY++  I      + HQPL   D+
Sbjct:  115 IVAALVLRLVTNNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGAVSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQWHQHWIFWVGPLLGAALAALVYEYAVIPIEPPPHHHQPLATEDY 256          
The following BLAST results are available for this feature:
BLAST of DY259838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TIP31_ORYSJ1.649e-4555.86Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP32_ARATH1.396e-4454.48Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP32_MAIZE2.382e-4457.34Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP31_ARATH1.182e-4354.11Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP21_ARATH1.001e-4258.82Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP_ANTMA7.171e-4159.56Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP41_ARATH9.366e-4158.02Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP2_TOBAC1.223e-4058.09Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC2.725e-4058.09Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIPA_PHAVU3.013e-3951.41Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259838 ID=DY259838; Name=DY259838; organism=Citrus clementina; type=EST; length=1104bp
GTTGTTGCTTGCTTTCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATC
GGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTG
AGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTG
GATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTTT
CATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATCAA
TGAACCCAGCAGTCTCTTTTGGTCCTGCTGTGGTTAGCTGGACTTGGACT
AACCACTGGGTCTACTGGCTTGGACCATTTATTGGTGCCGCGATTGCGGC
CATTGTTTACGACCACATCTTCATCGATGACAACGCTCACCAGCCACTTC
CTGCCAATGATTTCTAAGAATCTAATTAATCATAAACCTTTGTCTCTCTT
ATCGTTTTAGATCGTGGAAAGAATTGAAGCTGTGTTTCTTTGTACCTTTA
ATGTTGTTGCTGTAGTTATCCATTTATATTAGAACGAGTGGAAGGATTTT
TTGTCTAACAAACAAAAAAAAAAAAAGAACCCCTCCTTCCTTGTACAACG
TTGGCACTCAAAAAATTGATGGTCTATCCTTTAGTTGCTCCCAACCGCCA
CACACCTCCAAAATAGCTCCTTTTTTCCCCCCCACCCCCACTCCCCCACC
TCACCCTCACACCCCCCCCCCCACCCTCTCCTGGAGAACCTGGCCCGCTT
CTCTTTTTATTTCCGGTCATCTGTCCTTCTCCTCATCTACTCCCTAATAT
TCATCATTTCAATACCCCACACCTACACTATATTTGATTTTAGATCCTAG
AATTATCGGGCTCATCTCGTGAAGGCAGCTTCCAACACCCCGCTCGCCAT
CCACTCTCCTACTACCTTCTATTTTTTCCCTGTTCGCACCCAATGTACTC
AACCCATATCACTTTTAAGATGCGAGAACCCACATAATCCTTTCCCCACT
TTAGCGATCGTACCGTCCCTTGCTCTTTCACTCGAATCTTATGAGACCCA
CCTAACTAATTGTTTCCCACCCTAACTACATACTCCACTGAACTTCCATC
ATGT
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