DY259838

Overview
NameDY259838
Unique NameDY259838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1104
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14098 contig Ccv1_Contig14098:454..1557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 5.139e-39
Identity = 78/132 (59.09%), Postives = 95/132 (71.97%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQP 396
            +VAC LL F T G       +++G+ +   VV EIV+TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G SMNPA SFGPAVVS  ++  W+YW+GP +G A+A ++Y  +FI   A  P
Sbjct:  113 IVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYAPAP 244          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.145e-38
Identity = 79/130 (60.77%), Postives = 92/130 (70.77%), Query Frame = 1
Query:    4 VACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQ 393
            VAC LL+F T G       +S G +    VVFEIV+TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G SMNPA SFGPAV +  +  +WVYW+GP IG  +A +VY  +FI  +  Q
Sbjct:  114 VACLLLRFVTHGKAIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAADFAGNWVYWVGPLIGGGLAGLVYGDVFIGGSYQQ 243          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.495e-38
Identity = 77/125 (61.60%), Postives = 92/125 (73.60%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFI 375
            +VAC LL F T G       +S+G+ +   VV EIV+TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G SMNPA SFGPAVVS   +  W+YW+GP +G A+A ++Y  +FI
Sbjct:  113 IVACLLLVFVTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDLSQIWIYWVGPLVGGALAGLIYGDVFI 237          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.331e-38
Identity = 80/137 (58.39%), Postives = 97/137 (70.80%), Query Frame = 1
Query:    4 VACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF 414
            +AC LLKF T G       ++ G+S    VV EIV+TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G SMNPA SFGPAV +  +  +WVYW+GP IG  +A +VY  +FI   ++QP+   D+
Sbjct:  114 IACLLLKFVTHGKAIPTHGVA-GISELEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLIGGGLAGLVYGDVFI--GSYQPVADQDY 247          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.266e-37
Identity = 78/138 (56.52%), Postives = 102/138 (73.91%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF 414
            +V   L++F TG + T    LS GV ++  VV EI++TFGLVYTVYATA DPKKG+LGTIAPIAIGFIVGANIL  G F G SMNPA SFGPAV S  +TN W+YW+GP +G  +A +VY ++++  + H P+ +++F
Sbjct:  114 IVGAVLVQFCTG-VATPTHGLS-GVGAFEGVVMEIIVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGDYTNIWIYWVGPLVGGGLAGLVYRYVYMCGD-HAPVASSEF 248          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.653e-37
Identity = 78/130 (60.00%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    4 VACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQ 393
            VAC LL F T G      A++ G+S    VVFE+V+TF LVYTVYATA DPKKG+LGTIAPIAIGFIVGANILA G F G SMNPA SFGPAV +  +  +WVYW+GP +G  +A +VY  +FI  +  Q
Sbjct:  114 VACLLLGFVTHGKAIPTHAVA-GISELEGVVFEVVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGDFAGNWVYWVGPLVGGGLAGLVYGDVFIGGSYQQ 242          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 2.820e-37
Identity = 78/137 (56.93%), Postives = 98/137 (71.53%), Query Frame = 1
Query:    4 VACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF 414
            VACFLL++ T G       +S G+S    VV EIV+TF LVYTVYATA DPKKG+LGTIAP+AIGFIVGANILA G F G SMNPA SFGPAV +  +  +WVYW+GP +G  +A +VY  +FI   ++QP+   ++
Sbjct:  114 VACFLLQYVTHGQAIPTHGVS-GISEIEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLVGGGLAGLVYGDVFI--ASYQPVGQQEY 247          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 6.283e-37
Identity = 74/134 (55.22%), Postives = 95/134 (70.90%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLP 402
            V+A  LL+ ++GG+    F L   +   +A++ E+VMTFGLVYTVYATAVD + G  G IAP+AIG + GANILAGG FDGA+MNPA +FGPA+V W W +HWVYWLGP IGA +A  +Y+ +     A QP P
Sbjct:  122 VLAVLLLRLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGG-GDIAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWNWRHHWVYWLGPLIGAGMAGALYEFVM----AEQPEP 250          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.640e-35
Identity = 67/137 (48.91%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    4 VACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF 414
            +AC LL++ TGG+ T    L SG+     +V EI++TF L++ VYAT +DP+    G   P+  G IVGAN +AGG F GASMNPA SFGPA+ +  WT+HW+YWLGP IG  +A +VY+ +F+    H+PL  N F
Sbjct:  116 LACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPRSSVPG-FGPLLTGLIVGANTIAGGNFSGASMNPARSFGPALATGVWTHHWIYWLGPLIGGPLAGLVYESLFLVKRTHEPLLDNSF 251          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.918e-34
Identity = 67/137 (48.91%), Postives = 93/137 (67.88%), Query Frame = 1
Query:    4 VACFLLKF-STGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPAND 411
            +AC LL F +         AL +GV +   V+ E V+TF L++ VYAT VDP++  +G + P+ +G +VGAN+LAGG F GASMNPA SFGPA+V+  W +HWVYW+GP IG  +A +VYD +F+    H+PLP +D
Sbjct:  114 LACLLLAFLAVADSGVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRRA-VGGMGPLLVGLVVGANVLAGGPFSGASMNPARSFGPALVAGVWADHWVYWVGPLIGGPLAGLVYDGLFMAQGGHEPLPRDD 249          
The following BLAST results are available for this feature:
BLAST of DY259838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TIP22_ARATH5.139e-3959.09Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP22_MAIZE1.145e-3860.77Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP23_ARATH1.495e-3861.60Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP21_ORYSJ3.331e-3858.39Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP22_ORYSJ1.266e-3756.52Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP21_MAIZE1.653e-3760.00Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP23_MAIZE2.820e-3756.93Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP32_ORYSJ6.283e-3755.22Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP41_ORYSJ2.640e-3548.91Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP44_MAIZE2.918e-3448.91Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259838 ID=DY259838; Name=DY259838; organism=Citrus clementina; type=EST; length=1104bp
GTTGTTGCTTGCTTTCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATC
GGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTG
AGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTG
GATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTTT
CATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATCAA
TGAACCCAGCAGTCTCTTTTGGTCCTGCTGTGGTTAGCTGGACTTGGACT
AACCACTGGGTCTACTGGCTTGGACCATTTATTGGTGCCGCGATTGCGGC
CATTGTTTACGACCACATCTTCATCGATGACAACGCTCACCAGCCACTTC
CTGCCAATGATTTCTAAGAATCTAATTAATCATAAACCTTTGTCTCTCTT
ATCGTTTTAGATCGTGGAAAGAATTGAAGCTGTGTTTCTTTGTACCTTTA
ATGTTGTTGCTGTAGTTATCCATTTATATTAGAACGAGTGGAAGGATTTT
TTGTCTAACAAACAAAAAAAAAAAAAGAACCCCTCCTTCCTTGTACAACG
TTGGCACTCAAAAAATTGATGGTCTATCCTTTAGTTGCTCCCAACCGCCA
CACACCTCCAAAATAGCTCCTTTTTTCCCCCCCACCCCCACTCCCCCACC
TCACCCTCACACCCCCCCCCCCACCCTCTCCTGGAGAACCTGGCCCGCTT
CTCTTTTTATTTCCGGTCATCTGTCCTTCTCCTCATCTACTCCCTAATAT
TCATCATTTCAATACCCCACACCTACACTATATTTGATTTTAGATCCTAG
AATTATCGGGCTCATCTCGTGAAGGCAGCTTCCAACACCCCGCTCGCCAT
CCACTCTCCTACTACCTTCTATTTTTTCCCTGTTCGCACCCAATGTACTC
AACCCATATCACTTTTAAGATGCGAGAACCCACATAATCCTTTCCCCACT
TTAGCGATCGTACCGTCCCTTGCTCTTTCACTCGAATCTTATGAGACCCA
CCTAACTAATTGTTTCCCACCCTAACTACATACTCCACTGAACTTCCATC
ATGT
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