DY259838

Overview
NameDY259838
Unique NameDY259838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1104
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14098 contig Ccv1_Contig14098:454..1557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.978e-34
Identity = 64/136 (47.06%), Postives = 92/136 (67.65%), Query Frame = 1
Query:    4 VACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPAND 411
            +AC LL++ +GG+ T   AL +G+     +V E+++TF L++  YA  +DP+   + TI P+  G IVGAN LAGG F GASMNPA SFGPA+ +  WTNHWVYW+GP +G ++A  VY+ +F+ +  H+PL   D
Sbjct:  122 LACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPRS-QVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATGVWTNHWVYWIGPLLGGSLAGFVYESLFMVNKTHEPLLNGD 256          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.471e-33
Identity = 67/137 (48.91%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    4 VACFLLKFSTGGLET-SAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPAND 411
            +AC LL   TGG E     A + GV +  AV  E V+TF L++ VYAT VD ++  +G + P+ +G +VGANILAGG + GASMNPA SFGPA+ +  W +HW+YW+GP IG  +A +VY+ +F+    H+PLP ND
Sbjct:  113 LACLLLAALTGGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRRA-VGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPALAAGEWADHWIYWVGPLIGGPLAGLVYEGLFMGPPGHEPLPRND 248          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.471e-33
Identity = 64/131 (48.85%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    7 ACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPL 399
            AC LL+F +GG+ T   AL  G+S    +V E+++TF L++  YA  +DP+   +  I P+  G IVGAN LAGG F GASMNPA SFGPA+ +  WTNHWVYW+GP +G  +A  VY+ +F+    H+PL
Sbjct:  121 ACVLLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDPRS-QVRAIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPALATGDWTNHWVYWIGPLLGGPLAGFVYESLFLVQKMHEPL 250          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.151e-31
Identity = 69/136 (50.74%), Postives = 86/136 (63.24%), Query Frame = 1
Query:    7 ACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFI-DDNAHQPLPAND 411
            ACFLL++ TGGL T   AL+ GV     VV E V TF L++ +YAT +DP+K   G   P+  G +VGAN +AG A  GASMNPA SFGPAV S  WT+HWVYW+GP  G  +A +VY+  F+     H  LP  D
Sbjct:  114 ACFLLRWLTGGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRKLLPGA-GPLLTGLLVGANSVAGAALSGASMNPARSFGPAVASGVWTHHWVYWVGPLAGGPLAVLVYECCFMAAAPTHDLLPQQD 248          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 2.164e-29
Identity = 63/137 (45.99%), Postives = 83/137 (60.58%), Query Frame = 1
Query:    4 VACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFID----DNAHQPLP 402
            +AC LL+  TGG  T   AL+ GV     V  E V TF L+  + AT +DP++       P+  G +VGAN +AGGA  GASMNPA SFGPA+ +  W +HWVYW+GP  G  +A + Y+ +F+D      AHQPLP
Sbjct:  118 LACLLLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANTVAGGALTGASMNPARSFGPALATGEWAHHWVYWVGPLAGGPLAVVAYELLFMDVEDAGGAHQPLP 254          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.040e-23
Identity = 55/125 (44.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFI 375
            V+AC +LK +        + ++  ++ + A V E V+ F LVYTV+ TA DP++G    + PI IGF+ GAN+LA G F G SMNPA +FG A+V  ++ N  VYW+GP +G A AA+VYD++ +
Sbjct:  117 VMACLVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLAFVLVYTVF-TASDPRRGLPLAVGPIFIGFVAGANVLAAGPFSGGSMNPACAFGSAMVYGSFKNQAVYWVGPLLGGATAALVYDNVVV 240          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 9.114e-20
Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   34 GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD 381
            GGL  +   +   +++ + ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASMNPA SFGPAV+   W NHW+YW+GP IGA +A  +Y+++F  D
Sbjct:  146 GGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 258          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 1.190e-19
Identity = 54/141 (38.30%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    7 ACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLG--------TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPA 405
            AC +L + + G       ++  ++ + A + E V+TF +VYTV+  A DP+ G  G         +  + +G + GA +LA G+  GASMNPA SFGPAVVS  ++N  VYW GP +GAA+AA+V+  + +     +P PA
Sbjct:  114 ACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVHV-AGDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVVSGHYSNQAVYWAGPMVGAAVAALVHQAL-VFPTVPEPAPA 252          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.190e-19
Identity = 46/116 (39.66%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   34 GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD 381
            GGL  +   +   +++ + ++ E+++TF LV+T++A+    +    G++A +AIGF V    L    + GASMNPA SFGPAV+   W NHW+YW+GP IGA +A  +Y+++F  D
Sbjct:  143 GGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 255          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.555e-19
Identity = 46/116 (39.66%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   34 GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD 381
            GGL  +   +   +++ + ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASMNPA SFGPAV+   W NHW+YW+GP +GA +A  +Y+++F  D
Sbjct:  143 GGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWANHWIYWVGPIMGAVLAGALYEYVFCPD 255          
The following BLAST results are available for this feature:
BLAST of DY259838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TIP42_MAIZE4.978e-3447.06Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP43_ORYSJ2.471e-3348.91Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP41_MAIZE2.471e-3348.85Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP43_MAIZE5.151e-3150.74Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP42_ORYSJ2.164e-2945.99Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP51_ARATH1.040e-2344.00Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
AQP4_NOTAL9.114e-2040.52Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
TIP51_ORYSJ1.190e-1938.30Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
AQP4_RAT1.190e-1939.66Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_MOUSE1.555e-1939.66Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259838 ID=DY259838; Name=DY259838; organism=Citrus clementina; type=EST; length=1104bp
GTTGTTGCTTGCTTTCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATC
GGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTG
AGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTG
GATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTTT
CATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATCAA
TGAACCCAGCAGTCTCTTTTGGTCCTGCTGTGGTTAGCTGGACTTGGACT
AACCACTGGGTCTACTGGCTTGGACCATTTATTGGTGCCGCGATTGCGGC
CATTGTTTACGACCACATCTTCATCGATGACAACGCTCACCAGCCACTTC
CTGCCAATGATTTCTAAGAATCTAATTAATCATAAACCTTTGTCTCTCTT
ATCGTTTTAGATCGTGGAAAGAATTGAAGCTGTGTTTCTTTGTACCTTTA
ATGTTGTTGCTGTAGTTATCCATTTATATTAGAACGAGTGGAAGGATTTT
TTGTCTAACAAACAAAAAAAAAAAAAGAACCCCTCCTTCCTTGTACAACG
TTGGCACTCAAAAAATTGATGGTCTATCCTTTAGTTGCTCCCAACCGCCA
CACACCTCCAAAATAGCTCCTTTTTTCCCCCCCACCCCCACTCCCCCACC
TCACCCTCACACCCCCCCCCCCACCCTCTCCTGGAGAACCTGGCCCGCTT
CTCTTTTTATTTCCGGTCATCTGTCCTTCTCCTCATCTACTCCCTAATAT
TCATCATTTCAATACCCCACACCTACACTATATTTGATTTTAGATCCTAG
AATTATCGGGCTCATCTCGTGAAGGCAGCTTCCAACACCCCGCTCGCCAT
CCACTCTCCTACTACCTTCTATTTTTTCCCTGTTCGCACCCAATGTACTC
AACCCATATCACTTTTAAGATGCGAGAACCCACATAATCCTTTCCCCACT
TTAGCGATCGTACCGTCCCTTGCTCTTTCACTCGAATCTTATGAGACCCA
CCTAACTAATTGTTTCCCACCCTAACTACATACTCCACTGAACTTCCATC
ATGT
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