DY259838

Overview
NameDY259838
Unique NameDY259838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1104
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14098 contig Ccv1_Contig14098:454..1557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.030e-19
Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   34 GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD 381
            GGL  +   +   +++ + ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASMNPA SFGPAV+   W NHW+YW+GP IGA +A  +Y+++F  D
Sbjct:  143 GGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCPD 255          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.652e-19
Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   34 GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD 381
            GGL  +   +   +++ + ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASMNPA SFGPAV+   W NHW+YW+GP IGA +A  +Y+++F  D
Sbjct:  143 GGLGVTM--VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCPD 255          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.463e-19
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 1
Query:   28 STGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIF 372
            +  GL+    + SS ++   AV+ E ++TF LV  V   + DP + ++   AP+A+G  + A  L      GASMNPA SFGPAVV   W +HWVYW+GP +GA +AA++Y  +F
Sbjct:  124 AVSGLDLGVSSFSSTLTVGQAVLIEALITFILVVVVKGVS-DPGRTDIKGSAPLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQNMWIDHWVYWVGPIVGAIVAALLYKFVF 237          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 4.523e-19
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   34 GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD 381
            GGL  +   +   +S+ + ++ E+++TF LV+T++A+    +    G+IA +AIG  V    L    + GASMNPA SFGPAV+   W NHW+YW+GP IGA +A  +Y+++F  D
Sbjct:  143 GGLGVTT--VHGNLSAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGISVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCPD 255          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.316e-18
Identity = 52/127 (40.94%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWN---AVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIF 372
            +    ++K +  G+      +SS   S N   AV+ E ++TF LV+ V A + DP + ++   AP+A+G  + A  L      GASMNPA SFGPAVV   WT HWVYW+GP  G  +A I+Y  IF
Sbjct:  106 IAGAAVIKVALDGVAGGDLGVSSFDPSLNCAQAVLIEALITFILVFVVKAVS-DPGRQDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVVQGVWTYHWVYWVGPIAGGLLAGIIYRLIF 231          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.719e-18
Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            L  GVS   A   EI +T   V  ++AT  + + G LG+++ +AIGF +    L G  + GASMNPA SF PAV++  +TNHWVYW+GP IG A+  +VYD I
Sbjct:  121 LHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVS-LAIGFSLTLGHLFGLYYTGASMNPARSFAPAVLTRNFTNHWVYWVGPIIGGALGGLVYDFI 222          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.932e-18
Identity = 52/127 (40.94%), Postives = 69/127 (54.33%), Query Frame = 1
Query:    7 ACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLG---------TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVY 360
            AC  L   + G E     ++  ++ +   V E V+TF LVYTV+       +   G          +  +A+G   GA +LA GA  GASMNPA SFGPAVVS  + N  VYW GP +GAA+AA+VY
Sbjct:  117 ACLSLNLFSAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASMNPARSFGPAVVSGHFKNQAVYWAGPMVGAAVAALVY 243          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.001e-18
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            L  GVS   A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++  +TNHWVYW+GP IGA + +++YD +
Sbjct:  121 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 222          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.001e-18
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            L  GVS   A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++  +TNHWVYW+GP IGA + +++YD +
Sbjct:  121 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 222          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 5.001e-18
Identity = 49/126 (38.89%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAF---ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            +VA  +L   T  L  ++    AL+ GV+S   +  EI+ T  LV  V AT    ++ +LG   P+AIGF V    L    + G  +NPA SFG +V++  + +HW++W+GPFIGAA+A ++YD I
Sbjct:  108 IVATVILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRRDLGDSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFI 233          
The following BLAST results are available for this feature:
BLAST of DY259838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
AQP4_DIPME2.030e-1940.52Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_HUMAN2.652e-1940.52Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP_HAEIX3.463e-1941.74Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
AQP4_BOVIN4.523e-1940.52Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP_DROME1.316e-1840.94Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
MIP_RANPI1.719e-1846.60Lens fiber major intrinsic protein OS=Rana pipiens... [more]
TIP51_MAIZE2.932e-1840.94Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
MIP_SHEEP5.001e-1842.72Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_BOVIN5.001e-1842.72Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP1_SHEEP5.001e-1838.89Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259838 ID=DY259838; Name=DY259838; organism=Citrus clementina; type=EST; length=1104bp
GTTGTTGCTTGCTTTCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATC
GGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTG
AGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTG
GATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTTT
CATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATCAA
TGAACCCAGCAGTCTCTTTTGGTCCTGCTGTGGTTAGCTGGACTTGGACT
AACCACTGGGTCTACTGGCTTGGACCATTTATTGGTGCCGCGATTGCGGC
CATTGTTTACGACCACATCTTCATCGATGACAACGCTCACCAGCCACTTC
CTGCCAATGATTTCTAAGAATCTAATTAATCATAAACCTTTGTCTCTCTT
ATCGTTTTAGATCGTGGAAAGAATTGAAGCTGTGTTTCTTTGTACCTTTA
ATGTTGTTGCTGTAGTTATCCATTTATATTAGAACGAGTGGAAGGATTTT
TTGTCTAACAAACAAAAAAAAAAAAAGAACCCCTCCTTCCTTGTACAACG
TTGGCACTCAAAAAATTGATGGTCTATCCTTTAGTTGCTCCCAACCGCCA
CACACCTCCAAAATAGCTCCTTTTTTCCCCCCCACCCCCACTCCCCCACC
TCACCCTCACACCCCCCCCCCCACCCTCTCCTGGAGAACCTGGCCCGCTT
CTCTTTTTATTTCCGGTCATCTGTCCTTCTCCTCATCTACTCCCTAATAT
TCATCATTTCAATACCCCACACCTACACTATATTTGATTTTAGATCCTAG
AATTATCGGGCTCATCTCGTGAAGGCAGCTTCCAACACCCCGCTCGCCAT
CCACTCTCCTACTACCTTCTATTTTTTCCCTGTTCGCACCCAATGTACTC
AACCCATATCACTTTTAAGATGCGAGAACCCACATAATCCTTTCCCCACT
TTAGCGATCGTACCGTCCCTTGCTCTTTCACTCGAATCTTATGAGACCCA
CCTAACTAATTGTTTCCCACCCTAACTACATACTCCACTGAACTTCCATC
ATGT
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