DY259838

Overview
NameDY259838
Unique NameDY259838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1104
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14098 contig Ccv1_Contig14098:454..1557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 5.001e-18
Identity = 52/126 (41.27%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSS---GVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            +VA  +L   T  L  ++  L+S   GV S   +  EI+ T  LV  V AT  D ++ +LG  AP+AIGF V    L    + G  +NPA SFG AV++  + +HWV+W+GPFIG A+A ++YD I
Sbjct:  108 IVATAILSGITSSLPGNSLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGFSVALGHLLAIDYTGCGINPARSFGSAVITHNFQDHWVFWVGPFIGGALAVLIYDFI 232          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.531e-18
Identity = 44/103 (42.72%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            L  GVS   A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++  +TNHWVYW+GP IG  +A+++YD +
Sbjct:  121 LHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLASLLYDFL 222          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.114e-17
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            L +GVS   A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++  +TNHWVYW+GP IG  + +++YD +
Sbjct:  121 LHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLGSLLYDFL 222          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.114e-17
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFAL---SSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            VVA  +L   T GLE ++  L   S GVS+   +  EI++TF LV  V A   D ++ ++    P+AIG  V    L    + G  MNPA SFG AV++  +T HW++W+GP IG A AAI+YD I
Sbjct:  110 VVATAILSGITSGLENNSLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVAVT-DRRRHDVSGSVPLAIGLSVALGHLIAIDYTGCGMNPARSFGSAVLTKNFTYHWIFWVGPMIGGAAAAIIYDFI 234          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.114e-17
Identity = 50/126 (39.68%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            +VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG  AP+AIG  V    L    + G  +NPA SFG AV++  ++NHW++W+GPFIG A+A ++YD I
Sbjct:  106 IVATAILSGITSSLPGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFI 230          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.114e-17
Identity = 50/126 (39.68%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            +VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG  AP+AIG  V    L    + G  +NPA SFG AV++  ++NHW++W+GPFIG A+A ++YD I
Sbjct:  106 IVATAILSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFI 230          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.114e-17
Identity = 50/126 (39.68%), Postives = 75/126 (59.52%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAF---ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            +VA  +L   T  L  ++    AL+ GV+S   +  EI+ T  LV  V AT  D ++ +LG   P+AIGF V    L    + G  +NPA SFG +V++  + +HW++W+GPFIGAA+A ++YD I
Sbjct:  108 IVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFI 232          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.482e-17
Identity = 43/103 (41.75%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            L  GVS   A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++  +TNHWVYW+GP IG  + +++YD +
Sbjct:  121 LHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLGSLLYDFL 222          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 3.242e-17
Identity = 50/126 (39.68%), Postives = 75/126 (59.52%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            +VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG  AP+AIG  V    L    + G  +NPA SFG AV++  ++NHW++W+GPFIG+A+A ++YD I
Sbjct:  106 IVASAILSGITSSLLENSLGRNDLARGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLTRNFSNHWIFWVGPFIGSALAVLIYDFI 230          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 3.242e-17
Identity = 50/126 (39.68%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            +VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG  AP+AIG  V    L    + G  +NPA SFG AV++  ++NHW++W+GPFIG A+A ++YD I
Sbjct:  106 IVATAILSGITSSLVDNSLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLTRNFSNHWIFWVGPFIGGALAVLIYDFI 230          
The following BLAST results are available for this feature:
BLAST of DY259838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
AQP1_PIG5.001e-1841.27Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
MIP_RABIT8.531e-1842.72Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
MIP_CAVPO1.114e-1741.75Lens fiber major intrinsic protein OS=Cavia porcel... [more]
AQPA_RANES1.114e-1742.06Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP1_PONAB1.114e-1739.68Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP1_HUMAN1.114e-1739.68Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP1_BOVIN1.114e-1739.68Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
MIP_CANFA2.482e-1741.75Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP1_RAT3.242e-1739.68Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP1_MOUSE3.242e-1739.68Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259838 ID=DY259838; Name=DY259838; organism=Citrus clementina; type=EST; length=1104bp
GTTGTTGCTTGCTTTCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATC
GGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTG
AGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTG
GATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTTT
CATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATCAA
TGAACCCAGCAGTCTCTTTTGGTCCTGCTGTGGTTAGCTGGACTTGGACT
AACCACTGGGTCTACTGGCTTGGACCATTTATTGGTGCCGCGATTGCGGC
CATTGTTTACGACCACATCTTCATCGATGACAACGCTCACCAGCCACTTC
CTGCCAATGATTTCTAAGAATCTAATTAATCATAAACCTTTGTCTCTCTT
ATCGTTTTAGATCGTGGAAAGAATTGAAGCTGTGTTTCTTTGTACCTTTA
ATGTTGTTGCTGTAGTTATCCATTTATATTAGAACGAGTGGAAGGATTTT
TTGTCTAACAAACAAAAAAAAAAAAAGAACCCCTCCTTCCTTGTACAACG
TTGGCACTCAAAAAATTGATGGTCTATCCTTTAGTTGCTCCCAACCGCCA
CACACCTCCAAAATAGCTCCTTTTTTCCCCCCCACCCCCACTCCCCCACC
TCACCCTCACACCCCCCCCCCCACCCTCTCCTGGAGAACCTGGCCCGCTT
CTCTTTTTATTTCCGGTCATCTGTCCTTCTCCTCATCTACTCCCTAATAT
TCATCATTTCAATACCCCACACCTACACTATATTTGATTTTAGATCCTAG
AATTATCGGGCTCATCTCGTGAAGGCAGCTTCCAACACCCCGCTCGCCAT
CCACTCTCCTACTACCTTCTATTTTTTCCCTGTTCGCACCCAATGTACTC
AACCCATATCACTTTTAAGATGCGAGAACCCACATAATCCTTTCCCCACT
TTAGCGATCGTACCGTCCCTTGCTCTTTCACTCGAATCTTATGAGACCCA
CCTAACTAATTGTTTCCCACCCTAACTACATACTCCACTGAACTTCCATC
ATGT
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