DY259838

Overview
NameDY259838
Unique NameDY259838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1104
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14098 contig Ccv1_Contig14098:454..1557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.529e-17
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            L   VS   A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++  +TNHWVYW+GP IG  + +++YD +
Sbjct:  121 LHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSVA-LAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGNFTNHWVYWVGPIIGGGLGSLLYDFL 222          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 7.222e-17
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            L +GVS   A   EI +T   V  ++AT  + + G +G++A +A+GF +    L G  + GA MNPA SF PA+++  ++NHWVYW+GP IG  + +++YD +
Sbjct:  119 LHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFSNHWVYWVGPIIGGGLGSLLYDFL 220          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 7.222e-17
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            L +GVS   A   EI +T   V  ++AT  + + G +G++A +A+GF +    L G  + GA MNPA SF PA+++  ++NHWVYW+GP IG  + +++YD +
Sbjct:  121 LHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFSNHWVYWVGPIIGGGLGSLLYDFL 222          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.232e-16
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = 1
Query:   34 GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            GG+ T    +S G +   A+  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA SFGPAV+      W + W+YW+GPF+GAA+AAI + +I
Sbjct:  158 GGVNT----VSDGYNKGTALGAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYI 271          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 87.8113 bits (216), Expect = 1.232e-16
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   34 GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIF 372
            GGL  +  A   G+S+   V+ E ++TF LV+ V+    D ++ ++   AP+AIG  + A  LA   + GASMNPA SFGPAVV   +T+ WVYW+GP +G  +A  VY   F
Sbjct:  127 GGLGVTGIA--PGLSTGQGVLIEALITFMLVFVVHGVC-DNRRTDVKGSAPLAIGLSITAGHLAAIKYTGASMNPARSFGPAVVMGNYTDLWVYWVGPIVGGIVAGAVYRLFF 236          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.744e-16
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   34 GGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIF 372
            GGL  +   +   +++   V+ E ++TF LV+ V+    D ++ ++   AP+AIG  + A  L+   + GASMNPA SFGPAVV   WT+ WVYW+GP +G  +A  VY   F
Sbjct:  128 GGLGVTG--IDPRLTAGQGVMIEALITFILVFVVHGVC-DNRRSDIKGSAPLAIGLSITAGHLSAIKYTGASMNPARSFGPAVVMGNWTDQWVYWVGPIVGGILAGAVYRLFF 237          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.584e-16
Identity = 49/113 (43.36%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   52 AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            A +L+ G S+   +  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA SFG AV+   S  W +HW++W+GPFIGAAIAA  +  +
Sbjct:  158 ANSLADGYSTGTGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFV 269          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP8_RAT (Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.584e-16
Identity = 46/98 (46.94%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   88 AVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD 381
            A+  EIVMT  LV  V   AV+ K   +G +AP +IGF V  +ILAGG   GA MNPA +FGPAV++  W  HW+YWLGP +      ++   +FI D
Sbjct:  159 ALGVEIVMTMLLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAVMAGYWDFHWIYWLGPLLAGLFVGLLI-RLFIGD 253          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.681e-16
Identity = 47/120 (39.17%), Postives = 65/120 (54.17%), Query Frame = 1
Query:   58 ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAV-VSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF 414
            +L+ GV+     + E  +TF L+  V +   D +K NLG  AP+A+G  +    LA   + G+SMNPA SFGPAV     W NHWVYW GP +G  +A I Y  +F      +   + DF
Sbjct:  137 SLAPGVTPPMGFLVEACITFVLILLVQSVCDDRRK-NLGNAAPVAVGLAITCCHLAAIKYTGSSMNPARSFGPAVNGDDNWANHWVYWAGPIVGGVVAGITYRALFRARKPEEEASSYDF 255          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP8_NOTAL (Aquaporin-8 OS=Notomys alexis GN=AQP8 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.681e-16
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   88 AVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD 381
            A+  EI++T  LV  V   AV+ K   +G +AP +IGF V  +ILAGG   GA MNPA +FGPAVV+  W  HW+YWLGP +      ++   +FI D
Sbjct:  157 ALGVEIILTILLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAVVAGYWDFHWIYWLGPLLAGLFVGLLI-RLFIGD 251          
The following BLAST results are available for this feature:
BLAST of DY259838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
MIP_HUMAN5.529e-1740.78Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_RAT7.222e-1739.81Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE7.222e-1739.81Lens fiber major intrinsic protein OS=Mus musculus... [more]
PIP27_MAIZE1.232e-1642.86Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
AQP_ANOGA1.232e-1642.48Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
AQP_AEDAE2.744e-1639.82Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]
PIP21_ARATH3.584e-1643.36Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
AQP8_RAT3.584e-1646.94Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1[more]
AQP_CICVR4.681e-1639.17Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
AQP8_NOTAL4.681e-1645.92Aquaporin-8 OS=Notomys alexis GN=AQP8 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259838 ID=DY259838; Name=DY259838; organism=Citrus clementina; type=EST; length=1104bp
GTTGTTGCTTGCTTTCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATC
GGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTG
AGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTG
GATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTTT
CATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATCAA
TGAACCCAGCAGTCTCTTTTGGTCCTGCTGTGGTTAGCTGGACTTGGACT
AACCACTGGGTCTACTGGCTTGGACCATTTATTGGTGCCGCGATTGCGGC
CATTGTTTACGACCACATCTTCATCGATGACAACGCTCACCAGCCACTTC
CTGCCAATGATTTCTAAGAATCTAATTAATCATAAACCTTTGTCTCTCTT
ATCGTTTTAGATCGTGGAAAGAATTGAAGCTGTGTTTCTTTGTACCTTTA
ATGTTGTTGCTGTAGTTATCCATTTATATTAGAACGAGTGGAAGGATTTT
TTGTCTAACAAACAAAAAAAAAAAAAGAACCCCTCCTTCCTTGTACAACG
TTGGCACTCAAAAAATTGATGGTCTATCCTTTAGTTGCTCCCAACCGCCA
CACACCTCCAAAATAGCTCCTTTTTTCCCCCCCACCCCCACTCCCCCACC
TCACCCTCACACCCCCCCCCCCACCCTCTCCTGGAGAACCTGGCCCGCTT
CTCTTTTTATTTCCGGTCATCTGTCCTTCTCCTCATCTACTCCCTAATAT
TCATCATTTCAATACCCCACACCTACACTATATTTGATTTTAGATCCTAG
AATTATCGGGCTCATCTCGTGAAGGCAGCTTCCAACACCCCGCTCGCCAT
CCACTCTCCTACTACCTTCTATTTTTTCCCTGTTCGCACCCAATGTACTC
AACCCATATCACTTTTAAGATGCGAGAACCCACATAATCCTTTCCCCACT
TTAGCGATCGTACCGTCCCTTGCTCTTTCACTCGAATCTTATGAGACCCA
CCTAACTAATTGTTTCCCACCCTAACTACATACTCCACTGAACTTCCATC
ATGT
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