DY259838

Overview
NameDY259838
Unique NameDY259838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1104
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14098 contig Ccv1_Contig14098:454..1557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 4.681e-16
Identity = 47/126 (37.30%), Postives = 72/126 (57.14%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFA---LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            +VA  +L   T  L  ++     L+ GV+S   +  EI+ T  LV  V AT  D ++ +LG   P+AIG  V    L    + G  +NPA SFG +V++  + +HW++W+GPFIG A+A ++YD I
Sbjct:  108 IVATAILSGITSSLPDNSLGRNELAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGLSVALGHLLAIDYTGCGINPARSFGSSVITHNFKDHWIFWVGPFIGGALAVLIYDFI 232          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 7.984e-16
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   52 AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            A +L+ G ++   +  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA SFG AV+   S  W +HW++W+GPFIGAAIAA  +  +
Sbjct:  156 ANSLADGYNTGTGLAAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFV 267          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.984e-16
Identity = 48/113 (42.48%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   52 AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            A  L++G S    +  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G AV+      W NHW++W+GPF+GAAIAA  + +I
Sbjct:  163 ANTLAAGYSKGTGLAAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYI 274          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP8_MOUSE (Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.984e-16
Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   88 AVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGP-----FIGAAIAAIVYD 363
            A+  EI++T  LV  V   AV+ K   +G +AP +IGF V  +ILAGG+  GA MNPA +FGPAV++  W  HW+YWLGP     F+G  I  ++ D
Sbjct:  157 ALGIEIILTMLLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGSISGACMNPARAFGPAVMAGYWDFHWIYWLGPLLAGLFVGLLIRLLIGD 251          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.043e-15
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 1
Query:    7 ACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            + F +++  G  E     LS+G S    +  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G AV+      W +HW++W+GPFIGAAIAA  + ++
Sbjct:  148 SAFYVRYGGGANE-----LSAGYSKGTGLAAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQYV 269          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.779e-15
Identity = 41/104 (39.42%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   58 ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            AL +  ++  AV  E+ +T  LV  ++A+  + +  NLG+ A ++IGF V    L G  F G SMNPA S  PAVV+  + +HWV+W+GP +GA I +++Y+++
Sbjct:  120 ALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGSPA-LSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGKFDDHWVFWIGPLVGAVIGSLLYNYL 222          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.779e-15
Identity = 39/104 (37.50%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   58 ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            AL++  ++  AV  E+ +T  LV  ++A+  + +  N+GT A ++IGF V    L G  + G SMNPA S  PA+V+  + +HWV+W+GP +GA +A+++Y+++
Sbjct:  120 ALNNNSTAGQAVTVELFLTLQLVLCIFASTDERRGDNVGTPA-LSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGKFDDHWVFWIGPLVGAIVASLLYNYV 222          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 2.323e-15
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   58 ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYD 363
            AL   V      V E+++T   +  V+A+  D   G  G+ A + +GF +    L G  F GA MNPA SF PAV++  +TNHWV+W GP +GAA+AA++Y+
Sbjct:  120 ALHPSVGPGQGTVVELLLTAQFILCVFASFDDRHDGRPGSAA-LPVGFSLALGHLFGIPFTGAGMNPARSFAPAVITRNFTNHWVFWAGPLLGAALAALLYE 220          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.963e-15
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            L+ G ++   +  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA SFG AV+   S  W +HW++W+GPFIGA IAA  +  +
Sbjct:  159 LADGYNTGTGLAAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFV 267          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.963e-15
Identity = 41/104 (39.42%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   58 ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            AL +  ++  AV  E+ +T  LV  ++A+  + +  NLG+ A ++IGF V    L G  F G SMNPA S  PAVV+  + +HWV+W+GP +GA I +++Y+++
Sbjct:  120 ALHNNATAGQAVTVELFLTMQLVLCIFASTDERRGDNLGSPA-LSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGKFDDHWVFWIGPLVGAIIGSLLYNYL 222          
The following BLAST results are available for this feature:
BLAST of DY259838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
AQP1_CANFA4.681e-1637.30Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
PIP22_ARATH7.984e-1642.48Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_ORYSJ7.984e-1642.48Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
AQP8_MOUSE7.984e-1646.39Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1[more]
PIP25_MAIZE1.043e-1539.06Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
AQP2_MOUSE1.779e-1539.42Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
AQP2_BOVIN1.779e-1537.50Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
MIP_CHICK2.323e-1541.18Lens fiber major intrinsic protein OS=Gallus gallu... [more]
PIP23_ARATH3.963e-1541.82Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
AQP2_RAT3.963e-1539.42Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259838 ID=DY259838; Name=DY259838; organism=Citrus clementina; type=EST; length=1104bp
GTTGTTGCTTGCTTTCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATC
GGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTG
AGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTG
GATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTTT
CATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATCAA
TGAACCCAGCAGTCTCTTTTGGTCCTGCTGTGGTTAGCTGGACTTGGACT
AACCACTGGGTCTACTGGCTTGGACCATTTATTGGTGCCGCGATTGCGGC
CATTGTTTACGACCACATCTTCATCGATGACAACGCTCACCAGCCACTTC
CTGCCAATGATTTCTAAGAATCTAATTAATCATAAACCTTTGTCTCTCTT
ATCGTTTTAGATCGTGGAAAGAATTGAAGCTGTGTTTCTTTGTACCTTTA
ATGTTGTTGCTGTAGTTATCCATTTATATTAGAACGAGTGGAAGGATTTT
TTGTCTAACAAACAAAAAAAAAAAAAGAACCCCTCCTTCCTTGTACAACG
TTGGCACTCAAAAAATTGATGGTCTATCCTTTAGTTGCTCCCAACCGCCA
CACACCTCCAAAATAGCTCCTTTTTTCCCCCCCACCCCCACTCCCCCACC
TCACCCTCACACCCCCCCCCCCACCCTCTCCTGGAGAACCTGGCCCGCTT
CTCTTTTTATTTCCGGTCATCTGTCCTTCTCCTCATCTACTCCCTAATAT
TCATCATTTCAATACCCCACACCTACACTATATTTGATTTTAGATCCTAG
AATTATCGGGCTCATCTCGTGAAGGCAGCTTCCAACACCCCGCTCGCCAT
CCACTCTCCTACTACCTTCTATTTTTTCCCTGTTCGCACCCAATGTACTC
AACCCATATCACTTTTAAGATGCGAGAACCCACATAATCCTTTCCCCACT
TTAGCGATCGTACCGTCCCTTGCTCTTTCACTCGAATCTTATGAGACCCA
CCTAACTAATTGTTTCCCACCCTAACTACATACTCCACTGAACTTCCATC
ATGT
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