DY259838

Overview
NameDY259838
Unique NameDY259838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1104
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14098 contig Ccv1_Contig14098:454..1557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.175e-15
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   13 FLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVY 360
            F  ++  G  E SA     G S+   +  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G AVV   S  W++ W++W+GPFIGAAIAA+ +
Sbjct:  154 FYARYGGGANEVSA-----GYSTGTGLAAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYH 270          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.175e-15
Identity = 40/104 (38.46%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   58 ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            ALS+  ++  AV  E+ +T  LV  ++A+  + +  N GT A ++IGF V    L G  + G SMNPA S  PAVV+  + +HWV+W+GP +GA + +++Y+++
Sbjct:  120 ALSNSTTAGQAVTVELFLTLQLVLCIFASTDERRGENPGTPA-LSIGFSVALGHLLGIHYTGCSMNPARSLAPAVVTGKFDDHWVFWIGPLVGAILGSLLYNYV 222          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP8_HUMAN (Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 6.759e-15
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   88 AVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD 381
            A+V EI++T  L   V   A++ K    G +AP +IGF V  +ILAGG   G  MNPA +FGPAVV+  W  HW+YWLGP +   +  ++    FI D
Sbjct:  157 ALVAEIILTTLLALAVCMGAINEK--TKGPLAPFSIGFAVTVDILAGGPVSGGCMNPARAFGPAVVANHWNFHWIYWLGPLLAGLLVGLLI-RCFIGD 251          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.153e-14
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVY 360
            L++G S    +  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G AVV   S  W++ W++W+GPFIGAAIAA+ +
Sbjct:  160 LAAGYSKGTGLAAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYH 265          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.153e-14
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   52 AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            A  LS G S    V  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G A++      W +HW++W+GPF GAAIAA  +  +
Sbjct:  157 ANGLSDGYSIGTGVAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQFV 268          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.153e-14
Identity = 49/128 (38.28%), Postives = 71/128 (55.47%), Query Frame = 1
Query:    7 ACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            + F +++  G  E     LS G S    +  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G AV+      W +HW++W+GP IGAAIAA  + ++
Sbjct:  153 SAFYVRYGGGANE-----LSDGYSKGTGLAAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNQHKAWHDHWIFWVGPLIGAAIAAAYHQYV 274          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.153e-14
Identity = 48/121 (39.67%), Postives = 66/121 (54.55%), Query Frame = 1
Query:    7 ACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            A  +L+   GG      A   G +   ++V E V+TF L++ + A A D +   +G +A +A+G  +  N+L  G   GASMNPA S GPA+V   +T  WVY LGPF GAA  A  Y  I
Sbjct:  147 ASVVLRLMFGGRHAPVPATLPGGAHAQSLVIEFVITFYLMFVIMAVATDDQA--VGHMAGVAVGGTIMLNVLFAGPVSGASMNPARSIGPALVGSKYTALWVYILGPFAGAAAGAWAYSLI 265          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.153e-14
Identity = 43/105 (40.95%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   58 ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTN-HWVYWLGPFIGAAIAAIVYDHI 369
            AL++  ++  AVV E+++TF L   V+++    +   +G+ A ++IG  V    L G  F G SMNPA SFGPAV+   +++ HWV+W+GP +GAA AAI+Y ++
Sbjct:  121 ALNNNTTAGQAVVAEMILTFQLALCVFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVIMSRFSSAHWVFWVGPIVGAATAAIIYFYL 224          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.506e-14
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   52 AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            A  ++ G S+  A+  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA SFG AV+      W +HW++W+GPF+GA  AA  + +I
Sbjct:  149 ANTVADGYSTGTALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYI 260          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.506e-14
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            L++G S+   +  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G AVV   +  W++ W++W+GPFIGAAIAA+ +  I
Sbjct:  163 LAAGYSTGTGLAAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVI 271          
The following BLAST results are available for this feature:
BLAST of DY259838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PIP26_MAIZE5.175e-1541.46Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
AQP2_HUMAN5.175e-1538.46Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]
AQP8_HUMAN6.759e-1543.88Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2[more]
PIP25_ORYSJ1.153e-1443.93Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP25_ARATH1.153e-1441.59Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP23_ORYSJ1.153e-1438.28Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
NIP14_ORYSJ1.153e-1439.67Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
AQP5_SHEEP1.153e-1440.95Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
PIP28_ARATH1.506e-1440.71Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP24_ORYSJ1.506e-1442.73Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259838 ID=DY259838; Name=DY259838; organism=Citrus clementina; type=EST; length=1104bp
GTTGTTGCTTGCTTTCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATC
GGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTG
AGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTG
GATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTTT
CATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATCAA
TGAACCCAGCAGTCTCTTTTGGTCCTGCTGTGGTTAGCTGGACTTGGACT
AACCACTGGGTCTACTGGCTTGGACCATTTATTGGTGCCGCGATTGCGGC
CATTGTTTACGACCACATCTTCATCGATGACAACGCTCACCAGCCACTTC
CTGCCAATGATTTCTAAGAATCTAATTAATCATAAACCTTTGTCTCTCTT
ATCGTTTTAGATCGTGGAAAGAATTGAAGCTGTGTTTCTTTGTACCTTTA
ATGTTGTTGCTGTAGTTATCCATTTATATTAGAACGAGTGGAAGGATTTT
TTGTCTAACAAACAAAAAAAAAAAAAGAACCCCTCCTTCCTTGTACAACG
TTGGCACTCAAAAAATTGATGGTCTATCCTTTAGTTGCTCCCAACCGCCA
CACACCTCCAAAATAGCTCCTTTTTTCCCCCCCACCCCCACTCCCCCACC
TCACCCTCACACCCCCCCCCCCACCCTCTCCTGGAGAACCTGGCCCGCTT
CTCTTTTTATTTCCGGTCATCTGTCCTTCTCCTCATCTACTCCCTAATAT
TCATCATTTCAATACCCCACACCTACACTATATTTGATTTTAGATCCTAG
AATTATCGGGCTCATCTCGTGAAGGCAGCTTCCAACACCCCGCTCGCCAT
CCACTCTCCTACTACCTTCTATTTTTTCCCTGTTCGCACCCAATGTACTC
AACCCATATCACTTTTAAGATGCGAGAACCCACATAATCCTTTCCCCACT
TTAGCGATCGTACCGTCCCTTGCTCTTTCACTCGAATCTTATGAGACCCA
CCTAACTAATTGTTTCCCACCCTAACTACATACTCCACTGAACTTCCATC
ATGT
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