DY259838

Overview
NameDY259838
Unique NameDY259838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1104
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14098 contig Ccv1_Contig14098:454..1557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.506e-14
Identity = 43/105 (40.95%), Postives = 67/105 (63.81%), Query Frame = 1
Query:   58 ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWT-NHWVYWLGPFIGAAIAAIVYDHI 369
            ALS+  +   AVV E+++TF L   ++++    +   +G+ A ++IG  V    L G  F G SMNPA SFGPAVV   ++ +HWV+W+GP +GA +AAI+Y ++
Sbjct:  121 ALSNNTTPGKAVVVELILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWVGPIVGAVLAAILYFYL 224          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.967e-14
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   52 AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            A +L+SG S    +  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G AV+      W +HW++W+GP +GAAIAA  + +I
Sbjct:  163 ANSLASGYSRGTGLGAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYI 274          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQPB_DICDI (Aquaporin B OS=Dictyostelium discoideum GN=wacA PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.967e-14
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   43 ETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAV----DPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD 381
            + SA  L++GV+       E+V T  LV+ V   AV    DPK   +  +AP+AIG  V A +     F G S+NPA SFGPAV S TW  H++YW GP  G  IA + +  IF+ +
Sbjct:  140 DLSATTLATGVNVARGFFLEMVTTSFLVFVVLGVAVYNEWDPK---ISRVAPLAIGCAVIAGVGFLNLFTGGSLNPARSFGPAVFSDTWHRHYIYWFGPICGGIIAGLFW-RIFLSE 252          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.967e-14
Identity = 42/110 (38.18%), Postives = 70/110 (63.64%), Query Frame = 1
Query:   58 ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWT-NHWVYWLGPFIGAAIAAIVYDHIFIDDN 384
            +L++  +   AVV E+++TF L   ++++    +   +G+ A ++IG  V    L G  F G SMNPA SFGPAVV   ++ +HWV+W+GP +GAA+AAI+Y ++   ++
Sbjct:  121 SLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWVGPIVGAAVAAILYFYLLFPNS 229          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.568e-14
Identity = 49/113 (43.36%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   52 AFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            A +L+SG S    +  EIV TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G AVV      W +HW++W+GP +GAAIAA  + +I
Sbjct:  165 ANSLASGYSRGAGLGAEIVGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYI 276          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQPA_DICDI (Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.568e-14
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAV-DPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVY 360
            L+ G+++  A + E+++T  L   V  T+V +     L  IAP AIG  +   +  G  F G ++NP    GP+++S  W++HWVYWLGP +GA +AA +Y
Sbjct:  149 LAPGMNTGQAFLMEMMLTSILCLCVLGTSVFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALNPVRVLGPSIISGVWSHHWVYWLGPIVGAILAAFIY 249          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.355e-14
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   37 GLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVY 360
            G    A A++ G +  + +  EIV TF LVYTV++ A D K+     ++  +AP+ IGF V    LA     G  +NPA S G A+V   S  W +HW++W+GPFIGAA+AAI +
Sbjct:  162 GAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFS-ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYH 275          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 4.381e-14
Identity = 46/110 (41.82%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            ++SG S+  A+  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA S G AV+      W +HW++W GPFIGA  AA  + +I
Sbjct:  156 VASGYSTGTALGAEIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYI 264          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.381e-14
Identity = 42/110 (38.18%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   58 ALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTN-HWVYWLGPFIGAAIAAIVYDHIFIDDN 384
            AL++  +   A+V E+++TF L   ++A+    +   +G+ A ++IG  V    L G  F G SMNPA SFGPAVV   ++  HWV+W+GP +GA +AAI+Y ++   ++
Sbjct:  121 ALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNS 229          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.473e-14
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = 1
Query:   61 LSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKG----NLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV---SWTWTNHWVYWLGPFIGAAIAAIVYDHI 369
            LS G +    V  EI+ TF LVYTV++ A DPK+     ++  +AP+ IGF V    LA     G  +NPA SFG AV+      W + W++W+GPF+GAAIAA  +  +
Sbjct:  160 LSDGYNVGVGVGAEIIGTFVLVYTVFS-ATDPKRNARDSHIPVLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVIYNNQKAWDDQWIFWVGPFVGAAIAAFYHQFV 268          
The following BLAST results are available for this feature:
BLAST of DY259838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
AQP5_MOUSE1.506e-1440.95Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
PIP21_MAIZE1.967e-1441.59Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
AQPB_DICDI1.967e-1441.03Aquaporin B OS=Dictyostelium discoideum GN=wacA PE... [more]
AQP5_PIG1.967e-1438.18Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
PIP22_MAIZE2.568e-1443.36Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
AQPA_DICDI2.568e-1437.62Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE... [more]
PIP15_MAIZE3.355e-1441.74Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP26_ORYSJ4.381e-1441.82Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
AQP5_HUMAN4.381e-1438.18Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
PIP26_ARATH7.473e-1441.82Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259838 ID=DY259838; Name=DY259838; organism=Citrus clementina; type=EST; length=1104bp
GTTGTTGCTTGCTTTCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATC
GGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTG
AGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTG
GATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTTT
CATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATCAA
TGAACCCAGCAGTCTCTTTTGGTCCTGCTGTGGTTAGCTGGACTTGGACT
AACCACTGGGTCTACTGGCTTGGACCATTTATTGGTGCCGCGATTGCGGC
CATTGTTTACGACCACATCTTCATCGATGACAACGCTCACCAGCCACTTC
CTGCCAATGATTTCTAAGAATCTAATTAATCATAAACCTTTGTCTCTCTT
ATCGTTTTAGATCGTGGAAAGAATTGAAGCTGTGTTTCTTTGTACCTTTA
ATGTTGTTGCTGTAGTTATCCATTTATATTAGAACGAGTGGAAGGATTTT
TTGTCTAACAAACAAAAAAAAAAAAAGAACCCCTCCTTCCTTGTACAACG
TTGGCACTCAAAAAATTGATGGTCTATCCTTTAGTTGCTCCCAACCGCCA
CACACCTCCAAAATAGCTCCTTTTTTCCCCCCCACCCCCACTCCCCCACC
TCACCCTCACACCCCCCCCCCCACCCTCTCCTGGAGAACCTGGCCCGCTT
CTCTTTTTATTTCCGGTCATCTGTCCTTCTCCTCATCTACTCCCTAATAT
TCATCATTTCAATACCCCACACCTACACTATATTTGATTTTAGATCCTAG
AATTATCGGGCTCATCTCGTGAAGGCAGCTTCCAACACCCCGCTCGCCAT
CCACTCTCCTACTACCTTCTATTTTTTCCCTGTTCGCACCCAATGTACTC
AACCCATATCACTTTTAAGATGCGAGAACCCACATAATCCTTTCCCCACT
TTAGCGATCGTACCGTCCCTTGCTCTTTCACTCGAATCTTATGAGACCCA
CCTAACTAATTGTTTCCCACCCTAACTACATACTCCACTGAACTTCCATC
ATGT
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