DY259854

Overview
NameDY259854
Unique NameDY259854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14842 contig Ccv1_Contig14842:528..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 3.108e-17
Identity = 44/105 (41.90%), Postives = 56/105 (53.33%), Query Frame = 1
Query:    1 RDFGXXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 315
            +DFG              TQFGSGWAWL+                  +   +L V KTPNA NPL      LLT+DVWEHAYY+DF+N RP +I  ++D LV+W+
Sbjct:  105 QDFGSFDKLKEEFSNAAATQFGSGWAWLI------------------DDGGTLKVTKTPNAENPLAHGQKALLTLDVWEHAYYIDFRNARPAFIKNYLDNLVNWD 191          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.060e-17
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 342
            QFGSGWAWL                  S K+  L + KTPN  NPLV   +P+L +DVWEH+YY+D++N RP Y+  F+D L++W+ V +  E+A
Sbjct:  122 QFGSGWAWL------------------SVKNGKLEISKTPNGENPLVHGATPILGVDVWEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYEAA 198          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.925e-17
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 345
            +FGSGWAWLV                    D  L +  TPN   PL+   +P+L +DVWEHAYYL++QNRRPDYIS F + +V+W+ V+KR   AK
Sbjct:  126 RFGSGWAWLVVN------------------DGKLEITSTPNQDTPLMEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWN-VVNWDEVAKRYNEAK 202          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.181e-16
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   55 TQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDY------SPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 345
            T+FGSGWAWLV K                  D  L VV T N  NPL+ +       +P+L +DVWEHAYYL++QNRRPDY++ F + +V+W+ VSKR  +AK
Sbjct:  128 TRFGSGWAWLVVK------------------DGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWN-VVNWDEVSKRYAAAK 211          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.543e-16
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 342
            QFGSGWAWLV                  +KD  L +V TPN  NP+    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+W  V +  E+A
Sbjct:  123 QFGSGWAWLVV-----------------DKDGKLEIVSTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYIDAFWN-VVNWNKVDELYEAA 199          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STAS1 (Superoxide dismutase [Mn/Fe] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sodA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 345
            +FGSGWAWLV                    + +L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   +AK
Sbjct:  123 RFGSGWAWLVVN------------------NGNLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 40/111 (36.04%), Postives = 56/111 (50.45%), Query Frame = 1
Query:    1 RDFGXXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 333
            +DFG               QFGSGW W+VY                   D  L ++KT NA  P+V    P+L  DVWEHAYY+D++N+R DYI +F+  +++W+ V   L
Sbjct:  115 KDFGSFEQFCAQFKQEAVGQFGSGWTWVVYH------------------DNKLQIIKTSNAGTPIVNFMKPILACDVWEHAYYIDYRNKRSDYIDIFIRHMINWKFVEDNL 207          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STAEP (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis GN=sodA PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.000e-15
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 345
            +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   +AK
Sbjct:  123 RFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.000e-15
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 348
            +FGSGWAWLV                    +  L +  TPN  +P++   +P+L +DVWEHAYYL +QNRRP+YI+ F + +V+W+ V+KR   AKA
Sbjct:  126 RFGSGWAWLVVN------------------NGELEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPEYIAAFWN-IVNWDEVAKRYSEAKA 203          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STAXY (Superoxide dismutase [Mn/Fe] OS=Staphylococcus xylosus GN=sodA PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.306e-15
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 345
            +FGSGWAWLV                    + +L +V TPN  NP+    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   +AK
Sbjct:  123 RFGSGWAWLVVN------------------NGNLEIVTTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
The following BLAST results are available for this feature:
BLAST of DY259854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
SODF_ANASP3.108e-1741.90Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_RHIME4.060e-1743.16Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODM_BACHD6.925e-1745.83Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODM_DEIRA1.181e-1645.63Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODM_STACA1.543e-1645.26Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]
SODM_STAS17.656e-1644.79Superoxide dismutase [Mn/Fe] OS=Staphylococcus sap... [more]
SODF_RICPR7.656e-1636.04Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODM_STAEP1.000e-1544.79Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_BACCA1.000e-1542.27Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]
SODM_STAXY1.306e-1543.75Superoxide dismutase [Mn/Fe] OS=Staphylococcus xyl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YG16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259854 ID=DY259854; Name=DY259854; organism=Citrus clementina; type=EST; length=574bp
AGGGATTTTGGTCTTTTTGAAAAATTTCTTGAGGAATTCAAGGCGGCTGC
AGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTATACAAAGCCAATA
ATAGAGCTGATGTGGCTAATGCGGTGAATCCTCTTCCATCGGAGAAGGAC
AAGAGCCTTTTAGTGGTGAAGACTCCCAATGCTGTCAATCCTCTTGTCTG
GGATTACTCGCCGCTCCTTACTATTGATGTATGGGAGCATGCTTATTACC
TCGACTTTCAGAATCGACGACCTGATTACATATCAGTTTTCATGGATAAG
CTTGTATCATGGGAATCAGTAAGTAAAAGACTGGAATCAGCCAAAGCTCC
AGCTACCTAGATTGAAATGGAAGAATGATGAAGGAAGATGAAGAGAAAAT
AAATAATAAGCTGCTTGGTAGCAACACTATGTTGTGCTGATGATACTTTG
CTGAACAATAAAAATAGTTAGGTCTTTGGTACACACTACTTTGTGATTAG
TAACCTCTATTGTCAAAGTGTTGGTTTTCTCCTATAACACTCTGGTTATA
ATAAAACCTATCCAAGTATATGTA
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