DY259854

Overview
NameDY259854
Unique NameDY259854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14842 contig Ccv1_Contig14842:528..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_CAMCO (Superoxide dismutase [Fe] OS=Campylobacter coli GN=sodB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = 1
Query:   61 FGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 342
            FGSGW WLVY                + K++ L  V T NA  P+  D  PLL +DVWEHAYY+D +N RP Y+  F    ++WE V+K  E A
Sbjct:  125 FGSGWFWLVY----------------NTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPAYLEKFYAH-INWEFVAKAYEWA 201          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_ENTFA (Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 345
            +FGSGWAWLV                    +  L +  TPN  +PL+   +P+L +DVWEHAYYL ++N RPDYI  F + +V+W+ V++   +AK
Sbjct:  126 RFGSGWAWLVVN------------------NGKLEITSTPNQDSPLMDGQTPVLGLDVWEHAYYLKYKNVRPDYIEAFWN-VVNWDKVNELFAAAK 202          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STRP1 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M1 GN=sodA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13
Identity = 37/96 (38.54%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 345
            +FGSGWAWLV                   K+  L +  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +V+W+ VS+  ++AK
Sbjct:  124 RFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IVNWKKVSELYQAAK 201          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_PSEPU (Superoxide dismutase [Mn] OS=Pseudomonas putida GN=sodA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 1
Query:   55 TQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR-LESAK 345
            T+FGSGWAWL                      K+L+V  + N  +PL++  +P+  +DVWEHAYYL +QNRRP+YI  F + ++ W  V +R LE+ K
Sbjct:  124 TRFGSGWAWLSVTP-----------------QKTLVVESSGNQDSPLMFGNTPIFGLDVWEHAYYLKYQNRRPEYIGAFYN-VIDWAEVERRYLEALK 203          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STRP8 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M18 GN=sodA PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 345
            +FGSGWAWLV                   K+  L +  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +++W+ VS+  ++AK
Sbjct:  124 RFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSELYQAAK 201          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STRP6 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M6 GN=sodA PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 345
            +FGSGWAWLV                   K+  L +  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +++W+ VS+  ++AK
Sbjct:  124 RFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSELYQAAK 201          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STRP3 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M3 GN=sodA PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 345
            +FGSGWAWLV                   K+  L +  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +++W+ VS+  ++AK
Sbjct:  124 RFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSELYQAAK 201          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STRPY (Superoxide dismutase [Mn] OS=Streptococcus pyogenes GN=sodA PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 345
            +FGSGWAWLV                   K+  L +  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +++W+ VS   ++AK
Sbjct:  124 RFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSALYQAAK 201          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STRMU (Superoxide dismutase [Mn/Fe] OS=Streptococcus mutans GN=sodA PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 1
Query:   55 TQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 327
            T+FGSGWAWLV                  +K+  L V  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +++W +V++
Sbjct:  123 TRFGSGWAWLVV-----------------DKEGKLEVTSTANQDTPISQGLKPILALDVWEHAYYLNYRNVRPNYIKAFFE-VINWNTVAR 195          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1
Query:   61 FGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLES 339
            FGSGWAWLV                  + +  L V+ T NA NP+     PL+T DVWEHAYY+D +N RP Y++ F  ++V+W+ V K  +S
Sbjct:  119 FGSGWAWLV-----------------KDNNGKLEVLSTVNARNPMTEGKKPLMTCDVWEHAYYIDTRNDRPKYVNNFW-QVVNWDFVMKNFKS 193          
The following BLAST results are available for this feature:
BLAST of DY259854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
SODF_CAMCO3.557e-1342.55Superoxide dismutase [Fe] OS=Campylobacter coli GN... [more]
SODM_ENTFA4.645e-1339.58Superoxide dismutase [Fe] OS=Enterococcus faecalis... [more]
SODM_STRP16.067e-1338.54Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_PSEPU6.067e-1339.80Superoxide dismutase [Mn] OS=Pseudomonas putida GN... [more]
SODM_STRP87.923e-1337.50Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRP67.923e-1337.50Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRP37.923e-1337.50Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRPY1.351e-1237.50Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRMU1.351e-1238.46Superoxide dismutase [Mn/Fe] OS=Streptococcus muta... [more]
SODF_COXBU1.351e-1240.86Superoxide dismutase [Fe] OS=Coxiella burnetii GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YG16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259854 ID=DY259854; Name=DY259854; organism=Citrus clementina; type=EST; length=574bp
AGGGATTTTGGTCTTTTTGAAAAATTTCTTGAGGAATTCAAGGCGGCTGC
AGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTATACAAAGCCAATA
ATAGAGCTGATGTGGCTAATGCGGTGAATCCTCTTCCATCGGAGAAGGAC
AAGAGCCTTTTAGTGGTGAAGACTCCCAATGCTGTCAATCCTCTTGTCTG
GGATTACTCGCCGCTCCTTACTATTGATGTATGGGAGCATGCTTATTACC
TCGACTTTCAGAATCGACGACCTGATTACATATCAGTTTTCATGGATAAG
CTTGTATCATGGGAATCAGTAAGTAAAAGACTGGAATCAGCCAAAGCTCC
AGCTACCTAGATTGAAATGGAAGAATGATGAAGGAAGATGAAGAGAAAAT
AAATAATAAGCTGCTTGGTAGCAACACTATGTTGTGCTGATGATACTTTG
CTGAACAATAAAAATAGTTAGGTCTTTGGTACACACTACTTTGTGATTAG
TAACCTCTATTGTCAAAGTGTTGGTTTTCTCCTATAACACTCTGGTTATA
ATAAAACCTATCCAAGTATATGTA
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