DY259854

Overview
NameDY259854
Unique NameDY259854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14842 contig Ccv1_Contig14842:528..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STRAG (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae GN=sodA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 348
            +FGSGWAWLV                    +  L V+ T N   P++    P+L +DVWEHAYYL+++N RP+YI  F + +++W  V++  ++AKA
Sbjct:  124 RFGSGWAWLVVNA-----------------EGKLEVLSTANQDTPIMEGKKPILGLDVWEHAYYLNYRNVRPNYIKAFFE-IINWNKVNELYQAAKA 202          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STRA5 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype V GN=sodA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 348
            +FGSGWAWLV                    +  L V+ T N   P++    P+L +DVWEHAYYL+++N RP+YI  F + +++W  V++  ++AKA
Sbjct:  124 RFGSGWAWLVVNA-----------------EGKLEVLSTANQDTPIMEGKKPILGLDVWEHAYYLNYRNVRPNYIKAFFE-IINWNKVNELYQAAKA 202          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STRA3 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype III GN=sodA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 348
            +FGSGWAWLV                    +  L V+ T N   P++    P+L +DVWEHAYYL+++N RP+YI  F + +++W  V++  ++AKA
Sbjct:  124 RFGSGWAWLVVNA-----------------EGKLEVLSTANQDTPIMEGKKPILGLDVWEHAYYLNYRNVRPNYIKAFFE-IINWNKVNELYQAAKA 202          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_BORPE (Superoxide dismutase [Mn] OS=Bordetella pertussis GN=sodA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 348
            +FGSGWAWL                 P+ +   L V  + N  +PL+   +P+L +DVWEHAYYL +QNRRP+YI  F  ++V W  V++R E A A
Sbjct:  126 RFGSGWAWLTVT--------------PAGR---LRVDSSANQDSPLMEGNTPILGLDVWEHAYYLQYQNRRPEYIEAFY-RVVDWAEVARRYEIALA 204          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 39/92 (42.39%), Postives = 50/92 (54.35%), Query Frame = 1
Query:   61 FGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 336
            FGSGW WLV K                  D SL +  T  A  PL    +PLLT DVWEHAYY+D++N RP Y+  F + LV+W  V+++ E
Sbjct:  119 FGSGWGWLVKKA-----------------DGSLALASTIGAGCPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWN-LVNWAFVAEQFE 192          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 39/92 (42.39%), Postives = 50/92 (54.35%), Query Frame = 1
Query:   61 FGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 336
            FGSGW WLV K                  D SL +  T  A  PL    +PLLT DVWEHAYY+D++N RP Y+  F + LV+W  V+++ E
Sbjct:  119 FGSGWGWLVKKA-----------------DGSLALASTIGAGCPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWN-LVNWAFVAEQFE 192          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 39/89 (43.82%), Postives = 47/89 (52.81%), Query Frame = 1
Query:   61 FGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 327
            FGSGW WLV K                  D +L +V T NA  PL      LLT DVWEHAYY+D++N RP Y+  F   LV+WE  +K
Sbjct:  119 FGSGWTWLVKKA-----------------DGTLDIVNTSNAATPLTTADKALLTCDVWEHAYYIDYRNARPKYLENFW-ALVNWEFAAK 189          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STRR6 (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=sodA PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 37/97 (38.14%), Postives = 50/97 (51.55%), Query Frame = 1
Query:   55 TQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 345
            T+FGSGWAWLV                   K+  L V  T N   P+     P+L +DVWEHAYY+ ++N RPDYI  F   +++W  V +   +AK
Sbjct:  123 TRFGSGWAWLVVN-----------------KEGKLEVTSTANQDTPISEGKKPILGLDVWEHAYYVKYRNVRPDYIKAFF-SVINWNKVDELYAAAK 201          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODM_STRPN (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae GN=sodA PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 37/97 (38.14%), Postives = 50/97 (51.55%), Query Frame = 1
Query:   55 TQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 345
            T+FGSGWAWLV                   K+  L V  T N   P+     P+L +DVWEHAYY+ ++N RPDYI  F   +++W  V +   +AK
Sbjct:  123 TRFGSGWAWLVVN-----------------KEGKLEVTSTANQDTPISEGKKPILGLDVWEHAYYVKYRNVRPDYIKAFF-SVINWNKVDELYAAAK 201          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 38/86 (44.19%), Postives = 48/86 (55.81%), Query Frame = 1
Query:   61 FGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWD-YSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 315
            FGS W WLV                    D SL +V T NA  PL  D  +P+LT+D+WEHAYY+D++N RPDY+  F   LV+WE
Sbjct:  118 FGSSWTWLV-----------------KLADGSLDIVNTSNAATPLTDDGVTPILTVDLWEHAYYIDYRNVRPDYLKGFW-SLVNWE 185          
The following BLAST results are available for this feature:
BLAST of DY259854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
SODM_STRAG1.765e-1237.11Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA51.765e-1237.11Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA31.765e-1237.11Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_BORPE1.765e-1241.24Superoxide dismutase [Mn] OS=Bordetella pertussis ... [more]
SODF_PSEPU3.011e-1242.39Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]
SODF_PSEPK3.011e-1242.39Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]
SODF_BORPE3.011e-1243.82Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]
SODM_STRR65.136e-1238.14Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_STRPN5.136e-1238.14Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODF_PSEHT6.707e-1244.19Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YG16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259854 ID=DY259854; Name=DY259854; organism=Citrus clementina; type=EST; length=574bp
AGGGATTTTGGTCTTTTTGAAAAATTTCTTGAGGAATTCAAGGCGGCTGC
AGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTATACAAAGCCAATA
ATAGAGCTGATGTGGCTAATGCGGTGAATCCTCTTCCATCGGAGAAGGAC
AAGAGCCTTTTAGTGGTGAAGACTCCCAATGCTGTCAATCCTCTTGTCTG
GGATTACTCGCCGCTCCTTACTATTGATGTATGGGAGCATGCTTATTACC
TCGACTTTCAGAATCGACGACCTGATTACATATCAGTTTTCATGGATAAG
CTTGTATCATGGGAATCAGTAAGTAAAAGACTGGAATCAGCCAAAGCTCC
AGCTACCTAGATTGAAATGGAAGAATGATGAAGGAAGATGAAGAGAAAAT
AAATAATAAGCTGCTTGGTAGCAACACTATGTTGTGCTGATGATACTTTG
CTGAACAATAAAAATAGTTAGGTCTTTGGTACACACTACTTTGTGATTAG
TAACCTCTATTGTCAAAGTGTTGGTTTTCTCCTATAACACTCTGGTTATA
ATAAAACCTATCCAAGTATATGTA
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