DY259855

Overview
NameDY259855
Unique NameDY259855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1022
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_PSEMY (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas mendocina (strain ymp) GN=ispG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.756e-12
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  149 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHL-PGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKD 460
            F++L+  R+R+    +++CPSC R  FD+ +   E+  +   L   + +A++GC+VNGPGE  +A  G  GG+P  +    GK   K  +  E   D L +LI+D
Sbjct:  252 FDILKSLRLRSRGINFIACPSCSRQNFDVVKTMNELESRVEDLLVPLDVAVIGCVVNGPGEAKEAHIGLTGGSPNNLVYIDGKPASK--LTNENLVDELEKLIRD 354          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_CORJK (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Corynebacterium jeikeium (strain K411) GN=ispG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.112e-12
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  155 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVS----IAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQ 448
            +LQ   +R  K E VSCPSCGR   D+ +++ E+   T+ L G+     +A+MGC+VNGPGE  DAD G   G  GK  ++V   V+K  +  +Q  + LI+
Sbjct:  265 ILQSLNLRPRKLEIVSCPSCGRAQVDVYKLADEV---TAGLEGMEFPLRVAVMGCVVNGPGEARDADLGVASG-NGKGQIFVKGEVIKT-VPEDQIVETLIE 361          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_CORGL (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Corynebacterium glutamicum GN=ispG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.112e-12
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  155 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQ 448
            +LQ   +R  K E VSCPSCGR   D+  ++ E+ E    +   + +A+MGC+VNGPGE  DAD G   G  GK  ++V   V+K  +   Q  + LI+
Sbjct:  252 ILQSLNLRPRKLEIVSCPSCGRAQVDVYSLAEEVTEALDGMEVPLRVAVMGCVVNGPGEARDADLGVASG-NGKGQIFVKGEVIKT-VPESQIVETLIE 348          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_CLOPE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Clostridium perfringens GN=ispG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.112e-12
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  191 EYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIK 457
            E++SCP+CGRT  DL  I+ E+ E+ S     + +A+MGC+VNGPGE  +AD G  GG    +    G+ + K  +  E   + LI++I+
Sbjct:  260 EFISCPTCGRTQIDLINIAKEVEERLSSCKKNIKVAVMGCVVNGPGEAREADIGIAGGKGEGLIFRKGEIIKK--VKEEDLVEELIKIIE 347          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_CORU7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ispG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.059e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  155 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVS----IAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQ 448
            +LQ   +R  K E VSCPSCGR   D+  ++ E+   T+ L G+     +A+MGC+VNGPGE  DAD G   G  GK  ++V   V+K  +  +Q  + LI+
Sbjct:  265 ILQSLNLRPRKLEIVSCPSCGRAQVDVYTLAEEV---TAGLEGMEFPLRVAVMGCVVNGPGEARDADLGVASG-NGKGQIFVKGEVIKT-VPEDQIVETLIE 361          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_COREF (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Corynebacterium efficiens GN=ispG PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.059e-11
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  155 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQ 448
            +LQ   +R  K E VSCPSCGR   D+ +++ E+ E    L   + +A+MGC+VNGPGE  DAD G   G  GK  ++V   ++K  +   Q    LI+
Sbjct:  252 ILQSLNLRPRKLEIVSCPSCGRAQVDVYKLAEEVTEGLDGLEVPLRVAVMGCVVNGPGEARDADLGVASG-NGKGQIFVKGEIIKT-VPESQIVQTLIE 348          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_CORDI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Corynebacterium diphtheriae GN=ispG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.384e-11
Identity = 42/102 (41.18%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  155 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSI----AIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQ 448
            +LQ   +R    E VSCPSCGR   D+  ++ E+   T+ L G+SI    A+MGC+VNGPGE  DAD G   G  GK  ++V   V+K  +   Q  + LI+
Sbjct:  270 ILQSLNLRKRGLEIVSCPSCGRAQVDVYSLAEEV---TAALDGMSIPLRVAVMGCVVNGPGEARDADLGVASG-NGKGQIFVRGEVIKT-VPESQIVETLIE 366          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_CLOTE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Clostridium tetani GN=ispG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.384e-11
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 2
Query:  155 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKD 460
            +L+   + +   E++SCP+CGRT  +L +I+ E+ ++       + +AIMGC+VNGPGE  DAD G  GG      L   K  V R +  E   + LI+ IK+
Sbjct:  248 ILRALNLYSKGVEFISCPTCGRTEINLIKIAKEVEKRLDGFDKNIKVAIMGCVVNGPGEARDADIGIAGGK--GYGLIFKKGEVVRKLKEEDLVEGLIEEIKN 348          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_SALTO (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ispG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.083e-11
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  155 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVK---RGIAMEQATDALIQLIKDHGRWAEPPAE 490
            +L+   +R    E VSCPSCGR   D+ +++ E+      LP  + +A+MGC+VNGPGE  +AD G   G  GK  ++V   V+K    G  +E   +  ++L ++ G  AE P E
Sbjct:  265 ILESLGLRERGLEIVSCPSCGRAQVDVYKLAEEVTAGLEGLPVPLRVAVMGCVVNGPGEAREADLGVASG-NGKGQIFVKGQVIKTVPEGQIVETLIEEALRLAEEMG--AELPEE 377          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_RENSM (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=ispG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.026e-11
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  155 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSI----AIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQ 448
            +LQ   +R  K E VSCPSCGR   D+  ++ E+   T+ L G+ I    A+MGC+VNGPGE  +AD G   G  GK  ++V   V+K  +   Q  + LI+
Sbjct:  265 ILQSLNLRPRKLEIVSCPSCGRAQVDVYTLAEEV---TAGLEGMEIPLRVAVMGCVVNGPGEAREADLGVASG-NGKGQIFVKGEVIKT-VPESQIVETLIE 361          
The following BLAST results are available for this feature:
BLAST of DY259855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ISPG_PSEMY4.756e-1234.294-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CORJK8.112e-1240.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CORGL8.112e-1239.394-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CLOPE8.112e-1238.894-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CORU71.059e-1140.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_COREF1.059e-1139.394-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CORDI1.384e-1141.184-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CLOTE1.384e-1136.894-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SALTO3.083e-1136.214-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_RENSM4.026e-1140.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YG17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259855 ID=DY259855; Name=DY259855; organism=Citrus clementina; type=EST; length=1022bp
CCATATTCAGCTTTCGAATGGGATTCACAGGGATGACTTGGTCATTGGTG
CCGGTTCCAATGTAGGAGCCCTTTTAGTCGATGGACTTGGAGATGGTTTG
CTGTTAGAAGCCCCAGGACAAGATTTTGATTTTCTGAGGGACACATCTTT
CAACTTACTACAAGGTTGCAGAATGAGGAATACAAAGACGGAGTATGTCT
CATGTCCATCATGTGGTAGAACTTTGTTTGACCTTCAAGAAATAAGTGCA
GAGATACGAGAGAAAACATCGCACTTGCCCGGTGTTTCGATTGCTATCAT
GGGTTGCATTGTCAATGGACCTGGAGAGATGGCTGATGCAGACTTTGGGT
ATGTTGGTGGGGCTCCTGGAAAGATTGACCTGTATGTCGGGAAGACTGTG
GTGAAGCGTGGTATTGCAATGGAGCAGGCAACCGATGCCTTGATCCAACT
AATAAAGGATCACGGGCGCTGGGCGGAGCCTCCCGCAGAAGAGTAGGATA
TGGTAATTTCCATCAACAGATATACAATAAAGACTCAGTTGAAGGGAGAC
CACCATACCCCAGCTGTTGTATATTAAATTCCACATGGCACAAAAGACTA
CACAGTAATAGCAGATCATAATAATTTTTTCCGTCAGATGGAGCATCTAT
AGTTCACCAAGGAAAGCGTTATATGTTTCCTCAAGTGTATGCAGAAAAAG
CTGTAACCCTCCCATTATTAACAAGTCCCAAGTTTCCTACTTTTTGTTTT
CTACACAAACCCAAATAATAATGGTTTTCCCTAAGGGCATAAATAACTTT
CAATGAAACCCTTTGAGTTATGCCTGGGGGTTTCTCTCCTATGAGAAATG
GTTTAAAAAATATCCCTTCCTTTAAAAAAAAAAAAAAACCAACACCCAAC
TTTCTTCGTCAAGGTCTGGATTAATACACCACAAAGTGCTCCCACGTTTT
TTTCCCAAGAAACAGGCCATGATTCGTGTGGAGAAAAAACTACTATATTG
GTCCCCCGAGAGTATATCAACA
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