DY259855

Overview
NameDY259855
Unique NameDY259855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1022
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_LEIXX (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leifsonia xyli subsp. xyli GN=ispG PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 4.026e-11
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  155 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSI----AIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVK 406
            +LQ   +R  K E VSCPSCGR   D+ +++ ++   TS   G+S+    A+MGC+VNGPGE  +AD G   G  GK  ++V   V+K
Sbjct:  257 ILQSLNLRERKLEIVSCPSCGRAQVDVYKLAEDV---TSGFEGMSVPLRVAVMGCVVNGPGEAREADLGVASG-NGKGQIFVKGEVIK 340          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_DESPS (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Desulfotalea psychrophila GN=ispG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.026e-11
Identity = 34/106 (32.08%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  146 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKD 460
            +F LL+   +R    E +SCP+CGRT  DL  ++ ++ +    +   + +A+MGC+VNGPGE  +AD G  GG    + +   K V+ + +A EQ  +  +  +++
Sbjct:  249 AFELLRCLGIRQRGPELISCPTCGRTRIDLFSLAEKVEQVVQAMEAPIKVAVMGCVVNGPGEAKEADIGIAGGE--GLGIIFKKGVLYKKVAEEQLLEVFLAELRE 352          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_SACD2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.258e-11
Identity = 38/123 (30.89%), Postives = 68/123 (55.28%), Query Frame = 2
Query:  149 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEPPAEE*DMVISI 514
            +++L+  ++R+    +++CPSC R  FD+ +   E+  +   +   + +A++GC+VNGPGE  + D G  GG P  + +YV   V  +    E   D+L QLI+     AE  A+E D++  +
Sbjct:  252 WDILKSLKLRSKGINFIACPSCSRQNFDVIKTMNELEMRLEDITTPLDVAVIGCVVNGPGEAKEVDVGLAGGTPKNL-VYV-NGVPSQKFEQENLVDSLEQLIRKQA--AEKEAKEKDIIAKV 370          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_GRABC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.258e-11
Identity = 36/106 (33.96%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  149 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLY-VGKTVVKRGIAMEQATDALIQLIKD 460
            + +L+G  +R+   + +SCPSC R  F++ E  A + E+ +H+   ++++I+GC+VNGPGE    D G  GG  G+  +Y  GKT     IA +   D ++ L+++
Sbjct:  254 WEILKGLGLRHRGVKIISCPSCARQGFNVIETVAALEERLAHIQTPLTLSIIGCVVNGPGEALMTDIGLTGGGGGRHMIYNAGKT--DHTIAADGMVDHIVTLVEE 357          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_SALAI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Salinispora arenicola (strain CNS-205) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.867e-11
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  155 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVK---RGIAMEQATDALIQLIKDHGRWAEPPAE 490
            +L+   +R    E VSCPSCGR   D+ +++ E+      LP  + +A+MGC+VNGPGE  +AD G   G  GK  ++V   V+K    G  +E   +  ++L  + G  AE P E
Sbjct:  265 ILESLGLRERGLEIVSCPSCGRAQVDVYKLAEEVTAGLEGLPVPLRVAVMGCVVNGPGEAREADLGVASG-NGKGQIFVKGKVIKTVPEGQIVETLIEEALRLADEMG--AELPDE 377          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_RHOOB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Rhodococcus opacus (strain B4) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.867e-11
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  155 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSI----AIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQ 448
            +LQ   +R  K E VSCPSCGR   D+  ++ E+   T+ L G+ I    A+MGC+VNGPGE  +AD G   G  GK  ++V   V+K  +   Q  + LI+
Sbjct:  266 ILQSLNLRPRKLEIVSCPSCGRAQVDVYTLADEV---TAGLEGMEIPLRVAVMGCVVNGPGEAREADLGVASG-NGKGQIFVKGKVIKT-VPEAQIVETLIE 362          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_NOCFA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Nocardia farcinica GN=ispG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.867e-11
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  155 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSI----AIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQ 448
            +LQ   +R  K E VSCPSCGR   D+  ++ E+   T+ L G+ +    A+MGC+VNGPGE  +AD G   G  GK  ++V   V+K  +   Q  + LI+
Sbjct:  266 ILQSLNLRPRKLEIVSCPSCGRAQVDVYTLANEV---TAGLEGMEVPLRVAVMGCVVNGPGEAREADLGVASG-NGKGQIFVKGQVIKT-VPEHQIVETLIE 362          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_MARMS (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Marinomonas sp. (strain MWYL1) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.867e-11
Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  149 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGK 394
            +++L+  ++RN    +++CPSC R  FD+ +   E+ E+   +   + +A++GC+VNGPGE  +AD G  GG+P  +    GK
Sbjct:  252 WDMLRSLKLRNRGINFIACPSCSRQNFDVIKTMNELEERLDDITIPMDVAVIGCVVNGPGEAKEADIGLAGGSPNNLIYQDGK 334          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_CLAMS (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.867e-11
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 2
Query:  155 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHL-PGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVK 406
            +LQ   +R  K E VSCPSCGR   D+  ++ ++ E   H+   + +A+MGC+VNGPGE  +A+ G   G  G+  ++V   V+K
Sbjct:  264 ILQSLNLRERKLEIVSCPSCGRAQVDVYSLAEQVTEGLKHVNVPLRVAVMGCVVNGPGEAREAELGVASG-NGRGQIFVKGEVIK 347          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_CLAM3 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.867e-11
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 2
Query:  155 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHL-PGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVK 406
            +LQ   +R  K E VSCPSCGR   D+  ++ ++ E   H+   + +A+MGC+VNGPGE  +A+ G   G  G+  ++V   V+K
Sbjct:  264 ILQSLNLRERKLEIVSCPSCGRAQVDVYSLAEQVTEGLKHVNVPLRVAVMGCVVNGPGEAREAELGVASG-NGRGQIFVKGEVIK 347          
The following BLAST results are available for this feature:
BLAST of DY259855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ISPG_LEIXX4.026e-1142.054-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_DESPS4.026e-1132.084-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SACD25.258e-1130.894-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_GRABC5.258e-1133.964-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SALAI6.867e-1136.214-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_RHOOB6.867e-1140.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NOCFA6.867e-1139.224-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_MARMS6.867e-1134.944-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CLAMS6.867e-1138.824-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CLAM36.867e-1138.824-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YG17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259855 ID=DY259855; Name=DY259855; organism=Citrus clementina; type=EST; length=1022bp
CCATATTCAGCTTTCGAATGGGATTCACAGGGATGACTTGGTCATTGGTG
CCGGTTCCAATGTAGGAGCCCTTTTAGTCGATGGACTTGGAGATGGTTTG
CTGTTAGAAGCCCCAGGACAAGATTTTGATTTTCTGAGGGACACATCTTT
CAACTTACTACAAGGTTGCAGAATGAGGAATACAAAGACGGAGTATGTCT
CATGTCCATCATGTGGTAGAACTTTGTTTGACCTTCAAGAAATAAGTGCA
GAGATACGAGAGAAAACATCGCACTTGCCCGGTGTTTCGATTGCTATCAT
GGGTTGCATTGTCAATGGACCTGGAGAGATGGCTGATGCAGACTTTGGGT
ATGTTGGTGGGGCTCCTGGAAAGATTGACCTGTATGTCGGGAAGACTGTG
GTGAAGCGTGGTATTGCAATGGAGCAGGCAACCGATGCCTTGATCCAACT
AATAAAGGATCACGGGCGCTGGGCGGAGCCTCCCGCAGAAGAGTAGGATA
TGGTAATTTCCATCAACAGATATACAATAAAGACTCAGTTGAAGGGAGAC
CACCATACCCCAGCTGTTGTATATTAAATTCCACATGGCACAAAAGACTA
CACAGTAATAGCAGATCATAATAATTTTTTCCGTCAGATGGAGCATCTAT
AGTTCACCAAGGAAAGCGTTATATGTTTCCTCAAGTGTATGCAGAAAAAG
CTGTAACCCTCCCATTATTAACAAGTCCCAAGTTTCCTACTTTTTGTTTT
CTACACAAACCCAAATAATAATGGTTTTCCCTAAGGGCATAAATAACTTT
CAATGAAACCCTTTGAGTTATGCCTGGGGGTTTCTCTCCTATGAGAAATG
GTTTAAAAAATATCCCTTCCTTTAAAAAAAAAAAAAAACCAACACCCAAC
TTTCTTCGTCAAGGTCTGGATTAATACACCACAAAGTGCTCCCACGTTTT
TTTCCCAAGAAACAGGCCATGATTCGTGTGGAGAAAAAACTACTATATTG
GTCCCCCGAGAGTATATCAACA
back to top