DY259858

Overview
NameDY259858
Unique NameDY259858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1127
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.623e-11
Identity = 51/161 (31.68%), Postives = 73/161 (45.34%), Query Frame = 1
Query:  226 LSPKGVNYEVAALMALKIKMRDDLHVMDGWDINSVDPCTWNMVACSAEGFVVSLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQ-----------------------TLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIP 639
            + P+  +  V+AL  ++     DL    GW  +   P  WN + C     V SL ++ + L  ++SP+ G+L  L+T+ LHN  L+G I    G L +LQ                        LDL NN L G +P +LG L  L  L L NN L G +P
Sbjct:  341 IPPEASSTTVSALKVIEQFTGQDL----GWQDDPCTPLPWNHIECEGNR-VTSLFLSKINLR-SISPTFGDLLDLKTLDLHNTSLTGAIQ-NVGSLKDLQKLNLSFNQLESFGSELEDLVNLEVLDLQNNSLQGSVPETLGKLKKLRLLNLENNNLVGPLP 494          
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: TMM_ARATH (Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN=TMM PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.623e-11
Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 1
Query:  382 SLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIPTLVAXXXXXXXXXXXXXXXXGPYPK 714
            +L +   G  G +   +GNLT+L+ + LH N L+G IP+ F   S L++LDLS N+L G IP  +  L  L+ L LN N L+G +P  +                 GP P+
Sbjct:  163 TLVLRENGFLGPIPDELGNLTNLKVLDLHKNHLNGSIPLSFNRFSGLRSLDLSGNRLTGSIPGFV--LPALSVLDLNQNLLTGPVPPTLTSCGSLIKIDLSRNRVTGPIPE 271          
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.623e-11
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  226 LSPKGVNYEVAALMALKIKMRDDLHVMDGWDINSVDPCTWNMVACSAEGFVVSLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSL-GFLTHLTYLRLNNNKL-SGQIP 639
            LS    + +++A+++LK  +        GW  +  DPC W  + C+    V  +++   GL GTLSP + NL+ L  + L  N +SGP+P   G L+ LQ L LSNN     IPS +   LT L  + ++NN   S +IP
Sbjct:   20 LSKADSDGDLSAMLSLKKSLNPPSSF--GW--SDPDPCKWTHIVCTGTKRVTRIQIGHSGLQGTLSPDLRNLSELERLELQWNNISGPVPSLSG-LASLQVLMLSNNNF-DSIPSDVFQGLTSLQSVEIDNNPFKSWEIP 153          
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 6.038e-11
Identity = 35/107 (32.71%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  406 LSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIPTLVAXXXXXXXXXXXXXXXXGPYPKVLTN 726
            LSG   P +G +T L  +++ +N  +G +P   G L  L+ L +S+N + G IP SL  L +LT  R++ N LSG+IP  +                 GP P  ++N
Sbjct:  147 LSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESLSNLKNLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPIPASISN 253          
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.038e-11
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  373 FVVSLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIPT 642
            F   ++++   L+G++ P  G+L  L  + L NN LSG IP     ++ L+ LDLS+N L G IP SL  L+ L+   +  NKLSG IPT
Sbjct:  534 FPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPT 623          
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: BRL3_ARATH (Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.885e-11
Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  349 MVACSAEGFVVSLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIP 639
            M   S+ G ++ L+++   +SG++    G + +L+ + L +N L+G IP  FG L  +  LDLS+N L G +P SLG L+ L+ L ++NN L+G IP
Sbjct:  632 MYMFSSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIP 728          
The following BLAST results are available for this feature:
BLAST of DY259858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
Y5487_ARATH4.623e-1131.68Probable LRR receptor-like serine/threonine-protei... [more]
TMM_ARATH4.623e-1135.14Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN... [more]
TMK1_ARATH4.623e-1135.00Probable receptor protein kinase TMK1 OS=Arabidops... [more]
Y5344_ARATH6.038e-1132.71Probable LRR receptor-like serine/threonine-protei... [more]
PSKR1_DAUCA6.038e-1141.11Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
BRL3_ARATH7.885e-1138.14Receptor-like protein kinase BRI1-like 3 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YG20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259858 ID=DY259858; Name=DY259858; organism=Citrus clementina; type=EST; length=1127bp
CAGATTGCGACTTCTATATTCAATTTTCTGCACTGTCTCTCACTAAAAAA
AAGAAAAAAAGCAACCACATCCTTTTGCTTTACTGTTTGTTCACTTTCGG
GTTTCCAGTCCAAGTCAATGGGAAATAATCGAATGGCGGTGTCTTTTTTG
TTGTTGCTTTTAATTTTAATTTTCGCTTTGTTTTGGGAAGACACCAAAGT
GAAAGTATTAGCCTCTGACAGTCTCCTATCTCCCAAGGGCGTTAATTATG
AAGTTGCTGCTTTGATGGCTCTGAAGATCAAAATGAGAGATGATTTGCAT
GTGATGGACGGCTGGGATATTAACTCTGTGGATCCTTGTACTTGGAATAT
GGTCGCTTGCTCTGCTGAAGGTTTCGTTGTTTCTCTTGAAATGGCAAGCA
TGGGCTTATCAGGAACGCTGTCCCCAAGTATTGGGAACTTGACCCACCTA
AGAACAATGTTATTGCATAACAATCAGTTATCTGGTCCTATCCCAGTTGA
ATTTGGGATGCTCTCAGAGCTTCAAACTCTTGACCTTTCTAATAATCAAC
TTGTTGGAGAAATTCCAAGTTCTTTGGGTTTCCTGACTCATCTAACTTAC
TTGAGGCTTAATAACAACAAGTTATCTGGACAGATTCCTACTCTTGTTGC
CAATCTTACAAGTCTTTCATTCTTGGATTTATCATTCAATAATCTCAGTG
GGCCCTACCCTAAAGTACTAACCAACGGCTAAAGTTTTACAGGGAAAAGC
TTTCTTTGTACTACCTTGGAACATTCTGGCCCTGGTGTTTCAAAACCAAA
AAAAAAAAAGGTCTACCCCCAAAGCCCAGGTCCACCCCCATTGGGGGCTT
TCCCTTGCGGTTGGCACCCTTCCACATTTTTTTGTTCAAGGGGTTTCCTT
GTTTGTTGGGGGCTTGGGAAAAAATCCCCCCTTCTTTTACATCCAATTTT
ACACAAAAAAAAAAAAATTTATGTTTGCCACCCCAAAAAAAGTTTTCTTT
TTCGAGATATCAAATCTCCCCCTGAAAAATTTATTTCCCCAAAAAACCTT
TCCCGGCGGGGGGGAAAAAACCGGAAAATAAATATAAAAAGGGTGCTCCC
CCAAAAAAACAAGAGCGGGGGGCGAAA
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