DY259861

Overview
NameDY259861
Unique NameDY259861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: YGHZ_ECO57 (Uncharacterized protein yghZ OS=Escherichia coli O157:H7 GN=yghZ PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.604e-16
Identity = 53/163 (32.52%), Postives = 89/163 (54.60%), Query Frame = 2
Query:   77 GTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTN--EILLGKALKE---LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRR 550
            G  GL +  L  G     G  N+  S+    +I++ AF  GIT FD A+ YGP     E   G+ L+E     R+ + ++TK G+ ++        G+ +Y+ +  + SL+R+ +EY+D++Y HRVD + P+EET   +   V+ GK  Y+G+S  SP+  ++
Sbjct:   19 GKSGLRLPALSLGLWHNFGHVNALESQR---AILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGY-DMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQK 177          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.039e-15
Identity = 60/209 (28.71%), Postives = 107/209 (51.20%), Query Frame = 2
Query:   59 VPRVKLGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIG 655
            +P   LG  GL VS LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    + SL+RL +EY+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G
Sbjct:   89 MPHRNLGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVG 291          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: KCAB1_HUMAN (Voltage-gated potassium channel subunit beta-1 OS=Homo sapiens GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.039e-15
Identity = 60/209 (28.71%), Postives = 107/209 (51.20%), Query Frame = 2
Query:   59 VPRVKLGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIG 655
            +P   LG  GL VS LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    + SL+RL +EY+D+ + +R D++ P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G
Sbjct:   89 MPHRNLGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVG 291          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.039e-15
Identity = 61/204 (29.90%), Postives = 104/204 (50.98%), Query Frame = 2
Query:   74 LGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIG 655
            LG  GL VS LG G     GG    +S+E    ++  A+  G+  FDTA+ Y     E++LG  LK+    R ++ + TK  +   G  +   +G + +++     ASL+RL +EY+D+ + +R D + P+EE +  M  ++ +G   Y G S  S   I  A++V       P    Q E+ L+ R+ +E ++  L  ++G+G
Sbjct:   76 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAEQLMTIAYESGVNLFDTAEVYAAGKAEVILGNILKKKGWRRSSLVITTKLYW---GGKAETERGLSRKHIIEGLRASLQRLQLEYVDVVFANRPDNNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKVEVQLPELYHKIGVG 273          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.773e-15
Identity = 63/213 (29.58%), Postives = 110/213 (51.64%), Query Frame = 2
Query:   47 KKLQVPRVKLGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV------HPITAVQLEWSLWARD-IENEIVPLCRELGIG 655
            ++LQ  R  LG  GL VS LG G     GG    +++E    ++  A+  GI  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    +ASL RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G
Sbjct:   34 RQLQFYR-NLGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVG 239          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.773e-15
Identity = 63/213 (29.58%), Postives = 110/213 (51.64%), Query Frame = 2
Query:   47 KKLQVPRVKLGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIG 655
            ++LQ  R  LG  GL VS LG G     GG    +++E    ++  A+  GI  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    +ASL RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G
Sbjct:   34 RQLQFYR-NLGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVG 239          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.316e-15
Identity = 63/213 (29.58%), Postives = 110/213 (51.64%), Query Frame = 2
Query:   47 KKLQVPRVKLGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIG 655
            ++LQ  R  LG  GL VS LG G     GG    +++E    ++  A+  GI  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    +ASL RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G
Sbjct:   34 RQLQFYR-NLGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVG 239          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.316e-15
Identity = 63/213 (29.58%), Postives = 110/213 (51.64%), Query Frame = 2
Query:   47 KKLQVPRVKLGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIG 655
            ++LQ  R  LG  GL VS LG G     GG    +++E    ++  A+  GI  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    +ASL RL +EY+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G
Sbjct:   34 RQLQFYR-NLGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVG 239          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: AAD14_YEAST (Putative aryl-alcohol dehydrogenase AAD14 OS=Saccharomyces cerevisiae GN=AAD14 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.024e-15
Identity = 61/217 (28.11%), Postives = 104/217 (47.93%), Query Frame = 2
Query:   65 RVKLGTQGLEVSKLGFGCMSLS---GGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGK--ALKELPRENIQVATKFGF------VELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA------HAVHPITAVQLEWSLWARDIENEIVPLCRELGIGISP 664
            RV   T G+ VS L  G  S+     G+   +++E    ++   +  G    DTA+ Y    +EI +G+  A ++L R+ I +ATKF        V  G ++         +      SLR+L  ++ID+ Y H  D    IEE +  +  LV++GK+ Y+G+S+     +  A      H   P +  Q +W++  RD E +I+P+ R  G+ ++P
Sbjct:   19 RVLSKTAGIRVSPLILGGASIGDAWSGFMGSMNKEQAFELLDAFYEAGGNCIDTANSYQNEESEIWIGEWMASRKL-RDQIVIATKFTGDYKKYEVGGGKSANYCGNHKRSLHVSVRDSLRKLQTDWIDILYIHWWDYMSSIEEVMDSLHILVQQGKVLYLGVSDTPAWVVSAANYYATSHGKTPFSVYQGKWNVLNRDFERDIIPMARHFGMALAP 234          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: KCAB2_XENLA (Voltage-gated potassium channel subunit beta-2 OS=Xenopus laevis GN=kcnab2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.950e-15
Identity = 62/213 (29.11%), Postives = 110/213 (51.64%), Query Frame = 2
Query:   47 KKLQVPRVKLGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIG 655
            ++LQ  R  LG  GL VS LG G     GG    +++E    ++  A+  GI  FDTA+ Y     E++LG  +K+    R ++ + TK  +   G  +   +G + +++    +ASL RL ++Y+D+ + +R D + P+EET+  M  ++ +G   Y G S  S   I  A++V       P    Q E+ ++ R+ +E ++  L  ++G+G
Sbjct:   34 RQLQFYR-NLGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFW---GGKAETERGLSRKHIIEGLKASLERLQLDYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVG 239          
The following BLAST results are available for this feature:
BLAST of DY259861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
YGHZ_ECO571.604e-1632.52Uncharacterized protein yghZ OS=Escherichia coli O... [more]
KCAB1_RABIT1.039e-1528.71Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_HUMAN1.039e-1528.71Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_CHICK1.039e-1529.90Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB2_HUMAN1.773e-1529.58Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_BOVIN1.773e-1529.58Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_RAT2.316e-1529.58Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE2.316e-1529.58Voltage-gated potassium channel subunit beta-2 OS=... [more]
AAD14_YEAST3.024e-1528.11Putative aryl-alcohol dehydrogenase AAD14 OS=Sacch... [more]
KCAB2_XENLA3.950e-1529.11Voltage-gated potassium channel subunit beta-2 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YG23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259861 ID=DY259861; Name=DY259861; organism=Citrus clementina; type=EST; length=923bp
CAAAAACAACCTTACCGAAATTCTAGCTGCAAGTATGGCAGAAGATAAGA
AACTCCAAGTTCCAAGAGTGAAACTTGGAACCCAAGGCCTTGAGGTTTCA
AAGCTGGGGTTTGGATGCATGAGCCTCAGTGGCGGCTATAATTCTCCACT
CTCTGAAGAGGATGGCATCTCAATAATAAAGCATGCTTTCAGTAAAGGAA
TCACTTTCTTTGACACTGCTGATAAATATGGACCATATACTAATGAAATT
CTTCTTGGAAAGGCGTTGAAGGAGTTACCTAGAGAAAACATACAAGTGGC
CACAAAGTTTGGGTTTGTAGAATTGGGATTTACTTCTGTGATCGTGAAGG
GCACCCCTGAGTATGTGCGCTCGTGTTGTGAAGCTAGTTTGAGGCGCCTT
GATGTGGAATATATTGATCTGTACTATCAACATAGAGTGGACACATCAGT
TCCCATAGAGGAAACCATTGGCGAAATGAAAAAGCTGGTGGAAGAGGGTA
AAATAAAGTACATAGGATTATCTGAGGCTAGCCCAGATACAATTAGGAGA
GCACATGCTGTTCATCCCATCACAGCTGTACAACTGGAATGGTCCCTTTG
GGCTCGGGACATTGAGAATGAGATAGTACCACTTTGCAGGGAGCTTGGCA
TTGGAATAAGTCCCATACTGTCCTCTTGGTCGTGAATTTTTCGGTGGTAA
AGCTGTTGTGGAAAGTGTGGCCTTTGATAGCTTTTTGAAATTTTTCCTCC
GGTTCACCGGAAAAAACCGGGACAAAAACAGAATATCTTTTTCCCCAAAA
AAACCTGGCCAAAAAATACAAAGCCCTCCTGTCAATTACCCTCGGAAGGG
TTCCCCCCCGGGGGAGATGCTCACCCTTTCCCGCGAAACCACAAACACAA
CCCGAACAACATATGGCTCCTTC
back to top