DY259861

Overview
NameDY259861
Unique NameDY259861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: KCAB3_RAT (Voltage-gated potassium channel subunit beta-3 OS=Rattus norvegicus GN=Kcnab3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 59/204 (28.92%), Postives = 97/204 (47.55%), Query Frame = 2
Query:   74 LGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIG 655
            LG  GL VS LG G     G   S +S+E    ++  A+  G+  FDTA+ Y     E  LG  LK     R +  + TK  +   G  +   +G + +++    + SL RL +EY+D+ + +R D S P+EE +  M  ++ +G   Y G S  S   I  A+++       P    Q E   + R+ +E ++  L  ++G+G
Sbjct:   83 LGKSGLRVSCLGLGTWVTFG---SQISDETAEDLLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFW---GGQAETERGLSRKHIIEGLQGSLDRLQLEYVDIVFANRSDPSSPMEEIVRAMTYVINQGLALYWGTSRWSAAEIMEAYSMARQFNLIPPVCEQAENHFFQREKVEMQLPELYHKIGVG 280          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: KCAB3_HUMAN (Voltage-gated potassium channel subunit beta-3 OS=Homo sapiens GN=KCNAB3 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.029e-11
Identity = 57/204 (27.94%), Postives = 95/204 (46.57%), Query Frame = 2
Query:   74 LGTQGLEVSKLGFGCMSLSGGYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP--RENIQVATKFGFVELGFTSVIVKG-TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH------PITAVQLEWSLWARD-IENEIVPLCRELGIG 655
            LG  GL VS LG G     G   S +S+E    ++  A+  G+  FDTA+ Y     E  LG  LK     R +  + TK  +   G  +   +G + +++      SL RL + Y+D+ + +R D + P+EE +  M  ++ +G   Y G S      I  A+++       P    Q E  L+ R+ +E ++  L  ++G+G
Sbjct:   83 LGKSGLRVSCLGLGTWVTFG---SQISDETAEDVLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFW---GGQAETERGLSRKHIIEGLRGSLERLQLGYVDIVFANRSDPNCPMEEIVRAMTYVINQGLALYWGTSRWGAAEIMEAYSMARQFNLIPPVCEQAEHHLFQREKVEMQLPELYHKIGVG 280          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: YDBC_ECOLI (Putative oxidoreductase ydbC OS=Escherichia coli (strain K12) GN=ydbC PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.460e-11
Identity = 51/205 (24.88%), Postives = 101/205 (49.27%), Query Frame = 2
Query:   74 LGTQGLEVSKLGFGCMSLSGG--YNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRV--DTSVP----IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGISP 664
            LGT+   V++LG+G M L+G   +  P      I++++ A + G+   DT+D YGP+    ++ +AL     +++ + TK G       S +   +P  ++     +LR L ++ +D+     +  D   P    IE ++  + ++ ++G +K+IGLS  +P  +  A  +  I  VQ E+++ A   ++ ++      GI   P
Sbjct:    8 LGTKS--VNRLGYGAMQLAGPGVFGPPRDRHVAITVLREALALGVNHIDTSDFYGPHVTNQIIREALYPY-SDDLTIVTKIGARRGEDASWLPAFSPAELQKAVHDNLRNLGLDVLDVVNLRVMMGDGHGPAEGSIEASLTVLAEMQQQGLVKHIGLSNVTPTQVAEARKIAEIVCVQNEYNI-AHRADDAMIDALAHDGIAYVP 208          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: YEAE_ECOLI (Uncharacterized protein yeaE OS=Escherichia coli (strain K12) GN=yeaE PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 49/162 (30.25%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  167 ISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---ASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRE 643
            ++ ++     G+T  DTA+ Y     E ++G+AL  L RE + + +K      G    I         + CEASLRRL+ +Y+DLY  H    S   EET+  M+KL+ +GKI+  G+S    A    + +    +     Q+ + L +R IE +++P C++
Sbjct:   35 VAALRAGIELGLTLIDTAEMYADGGAEKVVGEALTGL-REKVFLVSKVYPWNAGGQKAI---------NACEASLRRLNTDYLDLYLLH-WSGSFAFEETVAAMEKLIAQGKIRRWGVSNLDYADMQELWQLPGGNQCATNQVLYHLGSRGIEYDLLPWCQQ 185          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: Y2320_MYCBO (Uncharacterized oxidoreductase Mb2320 OS=Mycobacterium bovis GN=Mb2320 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 60/200 (30.00%), Postives = 94/200 (47.00%), Query Frame = 2
Query:   92 EVSKLGFGCMSLSG---GYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQLEWSLWARDIENEIVP---LCRELGIGISPI 667
            +VS++G G         GY    +      I+K A + G+T FDTA+ YG   +E +LG+AL +  R  + VA+K            V   P  +++   AS RRL +  I LY  H+ +  VP    +  M+ L++ G I   G+S  S    R+A A    P+ + Q+ +SL   D   ++VP   L   + I  SP+
Sbjct:   11 QVSRIGLGTWQFGSREWGYGDRYATGAARDIVKRARALGVTLFDTAEIYGLGKSERILGEALGD-DRTEVVVASKV---------FPVAPFPAVIKNRERASARRLQLNRIPLYQIHQPNPVVPDSVIMPGMRDLLDSGDIGAAGVSNYSLARWRKADAALGRPVVSNQVHFSLAHPDALEDLVPFAELENRIVIAYSPL 200          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: Y2298_MYCTU (Uncharacterized oxidoreductase Rv2298/MT2355 OS=Mycobacterium tuberculosis GN=Rv2298 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 60/200 (30.00%), Postives = 94/200 (47.00%), Query Frame = 2
Query:   92 EVSKLGFGCMSLSG---GYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQLEWSLWARDIENEIVP---LCRELGIGISPI 667
            +VS++G G         GY    +      I+K A + G+T FDTA+ YG   +E +LG+AL +  R  + VA+K            V   P  +++   AS RRL +  I LY  H+ +  VP    +  M+ L++ G I   G+S  S    R+A A    P+ + Q+ +SL   D   ++VP   L   + I  SP+
Sbjct:   11 QVSRIGLGTWQFGSREWGYGDRYATGAARDIVKRARALGVTLFDTAEIYGLGKSERILGEALGD-DRTEVVVASKV---------FPVAPFPAVIKNRERASARRLQLNRIPLYQIHQPNPVVPDSVIMPGMRDLLDSGDIGAAGVSNYSLARWRKADAALGRPVVSNQVHFSLAHPDALEDLVPFAELENRIVIAYSPL 200          
BLAST of DY259861 vs. ExPASy Swiss-Prot
Match: AAD3_YEAST (Putative aryl-alcohol dehydrogenase AAD3 OS=Saccharomyces cerevisiae GN=AAD3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 54/227 (23.79%), Postives = 104/227 (45.81%), Query Frame = 2
Query:   38 AEDKKLQVPRVKL--GTQGLEVSKLGFGCMSLSGG---YNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP-RENIQVATKFGFVELGF------TSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA------HAVHPITAVQLEWSLWARDIENEIVPLCRELGIGISP 664
            A D   ++ R++    T  ++VS L  G +S  G    +   +++     ++   +  G  F D A+      +E  +G+ ++    R+ I +ATKF   +  +      T+         +      SLR+L  ++ID+ Y H  D    IEE +  +  LV++GK+ Y+G+S+     +  A      +   P +  Q +W++  RD E +I+P+ R  G+ ++P
Sbjct:    5 ASDSSSKLGRLRFLSETAAIKVSPLILGEVSYDGARSDFLKSMNKNRAFELLDTFYEAGGNFIDAANNCQNEQSEEWIGEWIQSRRLRDQIVIATKFIKSDKKYKAGESNTANYCGNHKRSLHVSVRDSLRKLQTDWIDILYVHWWDYMSSIEEFMDSLHILVQQGKVLYLGVSDTPAWVVSAANYYATSYGKTPFSIYQGKWNVLNRDFERDIIPMARHFGMALAP 231          
The following BLAST results are available for this feature:
BLAST of DY259861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
KCAB3_RAT4.088e-1228.92Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB3_HUMAN2.029e-1127.94Voltage-gated potassium channel subunit beta-3 OS=... [more]
YDBC_ECOLI3.460e-1124.88Putative oxidoreductase ydbC OS=Escherichia coli (... [more]
YEAE_ECOLI5.903e-1130.25Uncharacterized protein yeaE OS=Escherichia coli (... [more]
Y2320_MYCBO5.903e-1130.00Uncharacterized oxidoreductase Mb2320 OS=Mycobacte... [more]
Y2298_MYCTU5.903e-1130.00Uncharacterized oxidoreductase Rv2298/MT2355 OS=My... [more]
AAD3_YEAST7.709e-1123.79Putative aryl-alcohol dehydrogenase AAD3 OS=Saccha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YG23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259861 ID=DY259861; Name=DY259861; organism=Citrus clementina; type=EST; length=923bp
CAAAAACAACCTTACCGAAATTCTAGCTGCAAGTATGGCAGAAGATAAGA
AACTCCAAGTTCCAAGAGTGAAACTTGGAACCCAAGGCCTTGAGGTTTCA
AAGCTGGGGTTTGGATGCATGAGCCTCAGTGGCGGCTATAATTCTCCACT
CTCTGAAGAGGATGGCATCTCAATAATAAAGCATGCTTTCAGTAAAGGAA
TCACTTTCTTTGACACTGCTGATAAATATGGACCATATACTAATGAAATT
CTTCTTGGAAAGGCGTTGAAGGAGTTACCTAGAGAAAACATACAAGTGGC
CACAAAGTTTGGGTTTGTAGAATTGGGATTTACTTCTGTGATCGTGAAGG
GCACCCCTGAGTATGTGCGCTCGTGTTGTGAAGCTAGTTTGAGGCGCCTT
GATGTGGAATATATTGATCTGTACTATCAACATAGAGTGGACACATCAGT
TCCCATAGAGGAAACCATTGGCGAAATGAAAAAGCTGGTGGAAGAGGGTA
AAATAAAGTACATAGGATTATCTGAGGCTAGCCCAGATACAATTAGGAGA
GCACATGCTGTTCATCCCATCACAGCTGTACAACTGGAATGGTCCCTTTG
GGCTCGGGACATTGAGAATGAGATAGTACCACTTTGCAGGGAGCTTGGCA
TTGGAATAAGTCCCATACTGTCCTCTTGGTCGTGAATTTTTCGGTGGTAA
AGCTGTTGTGGAAAGTGTGGCCTTTGATAGCTTTTTGAAATTTTTCCTCC
GGTTCACCGGAAAAAACCGGGACAAAAACAGAATATCTTTTTCCCCAAAA
AAACCTGGCCAAAAAATACAAAGCCCTCCTGTCAATTACCCTCGGAAGGG
TTCCCCCCCGGGGGAGATGCTCACCCTTTCCCGCGAAACCACAAACACAA
CCCGAACAACATATGGCTCCTTC
back to top