DY259864

Overview
NameDY259864
Unique NameDY259864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length941
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259864 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.772e-18
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  377 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSCGCDGGYMDYAFEWVINHGGIHPESDYPYPGVDGTCNT 667
            P S+DWR  G VT VK+Q  CG+CW+F+    +E I  +  G L  LSEQ+++DC     GC GG+   AFE++I++ G+   + YPY    GTC T
Sbjct:    3 PQSIDWRDYGAVTSVKNQNPCGACWAFAAIATVESIYKIKKGILEPLSEQQVLDC-AKGYGCKGGWEFRAFEFIISNKGVASGAIYPYKAAKGTCKT 98          
BLAST of DY259864 vs. ExPASy Swiss-Prot
Match: PEPT1_EURMA (Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.954e-17
Identity = 57/189 (30.16%), Postives = 87/189 (46.03%), Query Frame = 2
Query:  110 FQRWKDKHGKAYKHTEEAERRFRNFKNNLEYVVEKKNNPGGHVVGLNKFADMSNEEFREIYLKKIQ--KPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSCGCDGGYMDYAFEWVINHGGIHPESDYPYPGVDGTCNTP 670
            F+ +K    K Y   E+ E   +NF  +L+YV   K         +N  +D+S +EF+  +L      + +             ++ S   PS LD R    VTP++ QG CGSCW+FS   + E          + L+EQELVDC + + GC G  +    E+ I   G+  E  YPY   + +C+ P
Sbjct:   26 FEEFKKAFNKTYATPEKEEVARKNFLESLKYVESNKG-------AINHLSDLSLDEFKNQFLMNANAFEQLKTQFDLNAETYACSINSVSLPSELDLRSLRTVTPIRMQGGCGSCWAFSGVASTESAYLAYRNMSLDLAEQELVDCASQN-GCHGDTIPRGIEY-IQQNGVVQEHYYPYVAREQSCHRP 205          
BLAST of DY259864 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.072e-15
Identity = 49/144 (34.03%), Postives = 73/144 (50.69%), Query Frame = 2
Query:  242 GLNKFADMSNEEFREIYL--KKIQKPIGKAIGNAKSNLHKTVQSCEAPSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLISLSEQELVDCDTTSCGCDGGYMDYAFEWVINHGGIH--PESDYPYPGVDGTC 661
            G+N+F+ +  EEF+ +YL  K    P   A G       + + +   P   DWR + +V PV++Q  CG CW+FS   AIE   A+    L  LS Q+++DC   + GC GG    A  W +N   +    +S YP+  V+G C
Sbjct:   59 GVNQFSYLFPEEFKALYLGSKYAWAPRYPAEGQ------RPIPNVSLPLRFDWRDKHVVNPVRNQEMCGGCWAFSVVSAIESARAIQGKSLDYLSVQQVIDCSFNNSGCLGGSPLCALRW-LNETQLKLVADSQYPFKAVNGQC 195          
BLAST of DY259864 vs. ExPASy Swiss-Prot
Match: CYSP3_CARCN (Cysteine proteinase 3 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.507e-12
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 2
Query:  377 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTG 502
            P S+DWRK+G VTPVK+QGSCGSCW+FST   +EGIN +V G
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIATVEGINKIVHG 43          
BLAST of DY259864 vs. ExPASy Swiss-Prot
Match: CATC_BOVIN (Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.394e-12
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  377 PSSLDWRK-RGI--VTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLIS--LSEQELVDCDTTSCGCDGGYMDYAFEWVINHGGIHPESDYPYPGVDGTC 661
            P+S DWR   GI  VTPV++QGSCGSC+SF++ G +E    ++T +  +  LS QE+V C   + GC+GG+            G+  E  +PY G D  C
Sbjct:  232 PTSWDWRNVHGINFVTPVRNQGSCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEDCFPYTGTDSPC 331          
BLAST of DY259864 vs. ExPASy Swiss-Prot
Match: CYSP4_CARCN (Cysteine proteinase 4 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.227e-11
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 2
Query:  377 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTG 502
            P S+DWRK+G VTPVK+QGSCGSCW+FST   +EGIN + TG
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIVTVEGINKIRTG 43          
BLAST of DY259864 vs. ExPASy Swiss-Prot
Match: CYSP2_CARCN (Cysteine proteinase 2 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.227e-11
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 2
Query:  377 PSSLDWRKRGIVTPVKDQGSCGSCWSFSTTGAIEGINALVTG 502
            P S+DWR++G VTPVKDQ  CGSCW+FST   +EGIN +VTG
Sbjct:    2 PGSVDWRQKGAVTPVKDQNPCGSCWAFSTVATVEGINKIVTG 43          
BLAST of DY259864 vs. ExPASy Swiss-Prot
Match: CATC_RAT (Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Ctsc PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.662e-11
Identity = 43/113 (38.05%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  362 QSCEAPSSLDWRK-RGI--VTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLIS--LSEQELVDCDTTSCGCDGGYMDYAFEWVINHGGIHPESDYPYPGVDGTCNTPRRKPK 685
            Q    P S DWR  RGI  V+PV++Q SCGSC+SF++ G +E    ++T +  +  LS QE+V C   + GCDGG+            G+  E+ +PY   D  C     KPK
Sbjct:  226 QILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPC-----KPK 333          
BLAST of DY259864 vs. ExPASy Swiss-Prot
Match: CATC_MACFA (Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=CTSC PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.662e-11
Identity = 38/100 (38.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  377 PSSLDWRK-RGI--VTPVKDQGSCGSCWSFSTTGAIEGINALVTGDLIS--LSEQELVDCDTTSCGCDGGYMDYAFEWVINHGGIHPESDYPYPGVDGTC 661
            P+S DWR   GI  V+PV++Q SCGSC+SF++ G +E    ++T +  +  LS QE+V C   + GC+GG+            G+  E+ +PY G D  C
Sbjct:  232 PTSWDWRNVHGINFVSPVRNQASCGSCYSFASVGMLEARIRILTNNSQTPILSSQEVVSCSQYAQGCEGGFPYLTAGKYAQDFGLVEEACFPYTGTDSPC 331          
The following BLAST results are available for this feature:
BLAST of DY259864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
BROM2_ANACO8.772e-1843.30Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
PEPT1_EURMA1.954e-1730.16Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV... [more]
CATO_MOUSE1.072e-1534.03Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]
CYSP3_CARCN5.507e-1269.05Cysteine proteinase 3 (Fragment) OS=Carica candama... [more]
CATC_BOVIN9.394e-1240.00Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 ... [more]
CYSP4_CARCN1.227e-1169.05Cysteine proteinase 4 (Fragment) OS=Carica candama... [more]
CYSP2_CARCN1.227e-1166.67Cysteine proteinase 2 (Fragment) OS=Carica candama... [more]
CATC_RAT4.662e-1138.05Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Cts... [more]
CATC_MACFA4.662e-1138.00Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=C... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YH03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259864 ID=DY259864; Name=DY259864; organism=Citrus clementina; type=EST; length=941bp
GGTTATTCTTTTCTTGATTTTGGCTTCGGCTACTAGCCTCCCTAGTGAAC
ACTCCATCATTGGTCATGACTTTAATGAGTTTGTTTCAGAGGAGCGGGTA
TTCGAGTTATTTCAACGATGGAAAGATAAGCATGGCAAGGCGTACAAGCA
TACAGAAGAGGCAGAAAGGAGGTTCAGAAATTTTAAGAATAACTTGGAGT
ATGTTGTTGAAAAGAAAAATAATCCTGGTGGGCATGTTGTTGGGTTGAAC
AAGTTTGCTGACATGAGCAATGAGGAGTTTCGAGAAATTTATTTGAAAAA
GATTCAAAAGCCTATTGGCAAAGCGATTGGTAATGCAAAGAGTAACTTGC
ACAAGACGGTACAATCATGCGAAGCACCATCGAGCTTGGATTGGAGGAAA
AGGGGAATCGTTACTCCTGTTAAGGACCAAGGAAGCTGTGGAAGTTGTTG
GTCGTTCTCTACGACTGGAGCCATTGAAGGAATAAATGCCTTGGTCACTG
GAGACCTCATTAGCCTTTCGGAACAAGAACTCGTGGATTGTGATACCACA
AGCTGTGGATGTGATGGAGGCTACATGGATTATGCATTTGAATGGGTTAT
TAACCACGGTGGAATCCACCCAGAATCTGATTATCCTTACCCCGGTGTCG
ATGGTACCTGCAATACCCCAAGGAGGAAACCCAAATTTGTATCATTGATG
GTTATAAAGACGTAGAGCCCCCCATAGTGCTCTGCCATGCGCCGCCGTTC
CCTCCCGATTCGCCCTTGCTTGGTTGGCTCCGCCATCGTTTTTCCCCCTT
TATCCCATGGGACCTTCACCCGGGGCCGGTCCCCCCCCCCCCTTTACCTC
GCCCAGCCGGTTTTCTCTCTCCGCCCTGTCCTTCAAAACGGGAGCAAATC
TTTGCATCTGCACACAATCCATGGGGACACACCTCCGGGGA
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