DY259866

Overview
NameDY259866
Unique NameDY259866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length912
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFU_ARATH (Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.540e-19
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    7 LRSPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKL 327
            LRSP E QS+Q    R+CTKV MQG+ +GRAVDL+  + Y+ L+ +LE++FDI+G L  +  +W++ +T            PW EFC MV+KI IY+ EEVK L     L
Sbjct:  496 LRSPIEIQSKQFSSSRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQL-QTRNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKILIYSKEEVKNLKSSKSL 604          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.540e-19
Identity = 50/103 (48.54%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   13 SPQES-QSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPK 318
            SP+E  Q    RS  KV MQG AVGRAVDLT    Y++L+K+LE+MF+IEG+L     KW +V+T            PW+EFC M +K+FIY ++EVKK+  K
Sbjct:  500 SPKEQKQQTSTRSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGEL-SPKDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSK 601          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.540e-19
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   13 SPQESQSRQ---IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSP 315
            SP+E QS+Q    RS TKV MQG+ VGRAVDL     Y +L+  +E++FDI+G+L  S  +W++V+T            PW EFC+MV++IFI++ EEVKK++P
Sbjct:  510 SPKEVQSKQSSSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGEL-RSRNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKMTP 612          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFT_ARATH (Auxin response factor 20 OS=Arabidopsis thaliana GN=ARF20 PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 2.627e-19
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    7 LRSPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKL 327
            LRSP E QS+Q    R+CTKV MQG+ +GRAVDL+  + Y+ L+ +LE++FD++G L  +  +W++ +T            PW EFC MV+KI IY+ EEVK L     L
Sbjct:  480 LRSPIEIQSKQFGSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQL-QTRNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKILIYSKEEVKNLKSSKSL 588          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFM_ARATH (Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 4.480e-19
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    7 LRSPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVK 324
            LRSP+E QS +    RS  KVHMQG+A+ RAVDLT    Y  L++KLEE+FD++ +L  +  +W++V+T            PW EFC+M ++IFI + EE+KK+  K K
Sbjct:  493 LRSPKEVQSTEFNFTRSRIKVHMQGVAISRAVDLTAMHGYNQLIQKLEELFDLKDEL-RTRNQWEIVFTNNEGAEMLVGDDPWPEFCNMAKRIFICSKEEIKKMKLKNK 600          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.224e-18
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = 1
Query:   28 QSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVK 303
            QS   R CTKVH QG  VGRA+DL+R + Y+DLL +LE +F++EG L    K W+++YT            PWH+FC++V KI +YT EEV+
Sbjct:  660 QSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEKGWRILYTDSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVE 751          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFA_ORYSJ (Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.882e-17
Identity = 53/108 (49.07%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   13 SPQESQSRQ---IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKL 327
            SPQE QS Q    R+  KV M G AVGRAVDL   D YE L+ +LEEMF+I+ DL    +KW+V +T            PW EFC MVRKI +Y  E+ KK+ P  KL
Sbjct:  582 SPQEIQSHQNYTARTRIKVQMHGNAVGRAVDLANLDGYEQLMNELEEMFNIK-DL---KQKWKVAFTDDEGDTMEVGDDPWLEFCQMVRKIVLYPIEDEKKIEPHPKL 685          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFL_ARATH (Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.342e-17
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    7 LRSPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFI 282
            LRSP E Q++Q    R+CTKV MQG+ +GRAVDL+  + Y+ L+ +LE++FDI+G L  +  +W++ +T            PW EFC+MV+KIFI
Sbjct:  496 LRSPTEIQNKQFSSSRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQL-QTRNQWEIAFTDSDEDKMLVGDDPWPEFCNMVKKIFI 589          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFV_ARATH (Auxin response factor 22 OS=Arabidopsis thaliana GN=ARF22 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.637e-16
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    7 LRSPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIY 285
            LRSP E QS+Q    R+CTKV MQG+ + RAVDL+  + Y+ L+ +LEE+FD++G L  +  +W++ +T            PW EFC+MV+KI I+
Sbjct:  494 LRSPTEIQSKQFSSTRTCTKVQMQGVTIERAVDLSVLNGYDQLILELEELFDLKGQL-QTRNQWEIAFTDSDDDKMLVGDDPWPEFCNMVKKILIF 588          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFO_ARATH (Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 6.056e-16
Identity = 40/95 (42.11%), Postives = 64/95 (67.37%), Query Frame = 1
Query:    7 LRSPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFI 282
            LRSP + QS+Q    R+CTKV MQG+ +GRAVDL+  + Y+ L+ +LE++FD++G L  +  +W++++T            PW EFC+MV++I+I
Sbjct:  496 LRSPTKIQSKQFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQL-QTRNQWKIIFTGSDEDEMLVGDDPWPEFCNMVKRIYI 589          
The following BLAST results are available for this feature:
BLAST of DY259866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ARFU_ARATH1.540e-1945.45Putative auxin response factor 21 OS=Arabidopsis t... [more]
ARFK_ARATH1.540e-1948.54Auxin response factor 11 OS=Arabidopsis thaliana G... [more]
ARFI_ARATH1.540e-1947.12Auxin response factor 9 OS=Arabidopsis thaliana GN... [more]
ARFT_ARATH2.627e-1944.55Auxin response factor 20 OS=Arabidopsis thaliana G... [more]
ARFM_ARATH4.480e-1944.95Auxin response factor 13 OS=Arabidopsis thaliana G... [more]
ARFD_ARATH2.224e-1847.83Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]
ARFA_ORYSJ1.882e-1749.07Auxin response factor 1 OS=Oryza sativa subsp. jap... [more]
ARFL_ARATH9.342e-1745.26Auxin response factor 12 OS=Arabidopsis thaliana G... [more]
ARFV_ARATH4.637e-1643.75Auxin response factor 22 OS=Arabidopsis thaliana G... [more]
ARFO_ARATH6.056e-1642.11Putative auxin response factor 15 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YH07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259866 ID=DY259866; Name=DY259866; organism=Citrus clementina; type=EST; length=912bp
TCGTGCCTGAGATCTCCTCAGGAGTCTCAAAGCAGGCAGATTCGAAGTTG
CACAAAGGTTCATATGCAAGGAATTGCAGTTGGGAGGGCTGTTGATTTGA
CACGATTTGACTGTTATGAAGACCTTCTCAAGAAACTGGAGGAGATGTTT
GACATTGAGGGAGACCTGTGTGGATCAACCAAGAAGTGGCAAGTGGTCTA
CACTGATGATGAAGATGACATGATGATGGTTGGAGATGATCCATGGCATG
AGTTCTGTAGCATGGTGAGGAAAATTTTCATCTACACAGCAGAAGAAGTA
AAGAAGCTGTCGCCCAAGGTAAAACTTCCAGGTAACGAGGAGCTCAATGC
AGGCAAGCCAGATGTTGAAGTGGTTGTCAACACTGATGATCGGTCATCTA
TTGTTGGACCTGGGTGCTGATATGCCTATGCAGTAAGAAATCAGCAGAGT
ATGGAGGTAATGGTAAGTTGACTGCCTTTAAGATTCGCCCTATAGTAGAA
TCATGAGGTTTAGAGAGAAGCAGCCTTTATAGTCGACATGCCATCCAAAG
AGGGAACTTGCCTTAAAGCATAAGAGTTTGGGTGTTAGAAGTTTCTTATT
TTGCTTTTGCCAAGGGAATCTAAAAGATGCTTGCTTATTCAAAGTCCGGG
TGAACGTGAAGTTTGTTGCGTCATATCTGGCGCCCAACTTAAGAGACAGA
AAACTTGTTCCTTCCCATTTCCTGGTTCCTCTTTTTTTCCTTTTTTCCCA
AAAAAATCTCCAAACACAAAAAAGGGGGAACTTTTCCCCTTTGAAAAAAG
TATAAAAACCCTTGGCCCCCCCCGGTTTGGCCCCCCAGGTATTGACCCCC
CCTCAGACTCCTCCCCGAAAAAAACTTTCTCACCTGAATTGATAAAAATA
TTTTCTTGGGCC
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