DY259871

Overview
NameDY259871
Unique NameDY259871
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1150
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1337 contig Ccv1_Contig1337:1..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259871 vs. ExPASy Swiss-Prot
Match: DNJB6_HUMAN (DnaJ homolog subfamily B member 6 OS=Homo sapiens GN=DNAJB6 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.289e-12
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  153 ELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSG 380
            + Y +L +   AS E+I+KAYR+ A  +HPDK   P  KE A   F+++ EAYE+LSD  KR IYD YG EGL  G
Sbjct:    3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKN--PENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGG 76          
BLAST of DY259871 vs. ExPASy Swiss-Prot
Match: DNJB4_MOUSE (DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.289e-12
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 3
Query:  150 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSG 380
            ++ Y +L +   A+DE+++KAYR+ A  +HPDK ++P     A E F+ + EAYE+LSD  KR IYD +G EGL  G
Sbjct:    3 KDYYHILGIDKGATDEDVKKAYRKQALKFHPDKNKSPQ----AEEKFKEVAEAYEVLSDPKKREIYDQFGEEGLKGG 75          
BLAST of DY259871 vs. ExPASy Swiss-Prot
Match: DNJB6_BOVIN (DnaJ homolog subfamily B member 6 OS=Bos taurus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.295e-12
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  153 ELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSG 380
            + Y +L +   AS E+I+KAYR+ A  +HPDK   P  KE A   F+++ EAYE+LSD  KR IYD YG EGL  G
Sbjct:    3 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKN--PENKEEAERKFKQVAEAYEVLSDAKKRDIYDRYGKEGLNGG 76          
BLAST of DY259871 vs. ExPASy Swiss-Prot
Match: DNJB1_MOUSE (DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 4.295e-12
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  150 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLELG 392
            ++ Y  L L+  ASD+EI++AYR+ A  YHPDK + P     A E F+ I EAY++LSD  KR I+D YG EGL  G   G
Sbjct:    3 KDYYQTLGLARGASDDEIKRAYRRQALRYHPDKNKEPG----AEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKGGSPSG 79          
BLAST of DY259871 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLSU (Chaperone protein dnaJ OS=Wolinella succinogenes GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.295e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  153 ELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTS 377
            + Y +L +   AS EEI+KAYR+ A  YHPD+ +     E   E F+R+ EAY++LSDE KR +YD YG +GL S
Sbjct:    5 DYYEILEIERSASGEEIKKAYRKMAMKYHPDRNEGSSEAE---EMFKRVNEAYQVLSDEGKRQLYDRYGKQGLES 76          
BLAST of DY259871 vs. ExPASy Swiss-Prot
Match: DNAJ_DELAS (Chaperone protein dnaJ OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.295e-12
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  150 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSGLELG 392
            R+ Y +L ++  ASD++I+KAYR+ A  YHPD+ Q    +E A E F+   EAYE+LSD NKR  YD YG  G+     +G
Sbjct:    4 RDFYEVLGVAKNASDDDIKKAYRKLAMKYHPDRNQGDAARE-AEEKFKEAKEAYEMLSDSNKRAAYDQYGHAGVDPNRGMG 83          
BLAST of DY259871 vs. ExPASy Swiss-Prot
Match: DNJB6_CHICK (DnaJ homolog subfamily B member 6 OS=Gallus gallus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.610e-12
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 3
Query:  153 ELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSG 380
            + Y +L +   AS E+I+KAYR+ A  +HPDK   P  KE A + F+++ EAYE+LSD  KR IYD +G EGL +G
Sbjct:    3 DYYEVLGVQKHASAEDIKKAYRKLALKWHPDKN--PENKEEAEQQFKQVAEAYEVLSDAKKRDIYDRFGKEGLING 76          
BLAST of DY259871 vs. ExPASy Swiss-Prot
Match: DNAJ_STACT (Chaperone protein dnaJ OS=Staphylococcus carnosus (strain TM300) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.610e-12
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 3
Query:  150 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGLTSG 380
            R+ Y +L +S +AS +EI+KAYR+ ++ YHPD  Q    +E A E F+ I EAYE+LSDENKR  YD +G +G   G
Sbjct:    4 RDYYEVLGVSKDASKDEIKKAYRKLSKKYHPDINQ----EEGAEEKFKEISEAYEVLSDENKRANYDQFGHDGPQGG 76          
BLAST of DY259871 vs. ExPASy Swiss-Prot
Match: DNJB1_HUMAN (DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 9.569e-12
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  150 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 371
            ++ Y  L L+  ASDEEI++AYR+ A  YHPDK + P     A E F+ I EAY++LSD  KR I+D YG EGL
Sbjct:    3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG----AEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL 72          
BLAST of DY259871 vs. ExPASy Swiss-Prot
Match: DNJB1_BOVIN (DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 9.569e-12
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  150 RELYALLHLSPEASDEEIRKAYRQWAQVYHPDKYQAPHMKEIATENFQRICEAYEILSDENKRLIYDIYGMEGL 371
            ++ Y  L L+  ASDEEI++AYR+ A  YHPDK + P     A E F+ I EAY++LSD  KR I+D YG EGL
Sbjct:    3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG----AEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL 72          
The following BLAST results are available for this feature:
BLAST of DY259871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
DNJB6_HUMAN3.289e-1250.00DnaJ homolog subfamily B member 6 OS=Homo sapiens ... [more]
DNJB4_MOUSE3.289e-1245.45DnaJ homolog subfamily B member 4 OS=Mus musculus ... [more]
DNJB6_BOVIN4.295e-1250.00DnaJ homolog subfamily B member 6 OS=Bos taurus GN... [more]
DNJB1_MOUSE4.295e-1248.15DnaJ homolog subfamily B member 1 OS=Mus musculus ... [more]
DNAJ_WOLSU4.295e-1248.00Chaperone protein dnaJ OS=Wolinella succinogenes G... [more]
DNAJ_DELAS4.295e-1245.68Chaperone protein dnaJ OS=Delftia acidovorans (str... [more]
DNJB6_CHICK5.610e-1248.68DnaJ homolog subfamily B member 6 OS=Gallus gallus... [more]
DNAJ_STACT5.610e-1249.35Chaperone protein dnaJ OS=Staphylococcus carnosus ... [more]
DNJB1_HUMAN9.569e-1251.35DnaJ homolog subfamily B member 1 OS=Homo sapiens ... [more]
DNJB1_BOVIN9.569e-1251.35DnaJ homolog subfamily B member 1 OS=Bos taurus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YH12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259871 ID=DY259871; Name=DY259871; organism=Citrus clementina; type=EST; length=1150bp
GGAGTAATGCATCTCTCTCTTCTAACATGTTGGATGTCGAAGAACGAACT
GAGTTCACTTTTTCTTTGAGATTCTGAGGACCCAAGAGAGAAAAAAAAAA
AAGAAGAAAAAAGTCAAAGATGAGGGAAGCAAAGGACGGGCCGCCAAACA
GGGAATTGTATGCACTGTTGCATCTTTCGCCGGAAGCCTCCGATGAAGAA
ATCAGAAAAGCTTATCGCCAGTGGGCCCAAGTCTATCACCCTGATAAATA
TCAAGCTCCTCATATGAAGGAAATTGCTACAGAGAACTTTCAGAGGATAT
GTGAAGCGTACGAAATATTATCAGATGAGAATAAGCGGCTGATATATGAT
ATATATGGTATGGAAGGATTGACTTCTGGGTTGGAACTTGGTCCAAAGCT
AAATAAAGTGGAAGAGTTAAAGGAAGAGCTTGAAAGGCTACGGCAGAGGA
AGGAACAAGAGAAGGCTTTAGCACATTTTCGTCCTTCTGGGACGATACTG
GCCAGCTTCTCTTTGCCACAGTTTCTAGAGGGTGATGGCATAATGAGAGG
GATGGCTATGAGTAGTGAAGTTCAGTCTCAACTATCTAAAAACAGTATTC
TTGCTTTTGGTGGAAATTTGGAAGTAAATGATGATTCTGGTGGTGGAGCT
GCTTCAGTTGTGCTTAGGCATCAGTTGTCCTCTGTCTCATCTATAGAATT
TATAGCTTCAGCTGGTTTACGGGCACTGGTTGGAATACAAACCACCCGGT
AGCTCATTTGTTTTGATGTGTCCTTTTGACTATTTGGCCTATAAACTTTG
TTCCCTTTTATTTTCTCATTTTATAGTCCCCCTACCATCACATTCCACCG
GCAAAAATGGCCGTTGGCCATGTCTTTGAAAAATGGCCCCCTTAATCCTT
TCCAAAAACCGGGACCCCGCCAGATCCCCCGAACCAACGAAAGGGGAAAA
AACCGCCCCTTGGTGGGGTAAAAAGCCTACCATTTCCGGTTGGGGGGGCA
AAAAAAAAAAAGAAAAAAAGGTCTCGCCGGGGGGGGAAGACCTTTAAAAA
TGGGGCCCAAATTTTCTTTTTGGGGGCCATCCCCCCTCCTTTTATATCCC
CCCGGGGTTTTTCCCAAAAAAACCCCCGGGGGGGCCGAAATACAGGGGGG
back to top