DY259874

Overview
NameDY259874
Unique NameDY259874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length901
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 8.605e-57
Identity = 112/210 (53.33%), Postives = 145/210 (69.05%), Query Frame = 2
Query:  197 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGVVTNWALVSMNHDTQSLLDPNVMEAK---------------VVVSSCGHEGPFGA 760
            D + FKF PI+ES VSR MT RY  D+  +A +D    GAGS+GLS AY ++KN P++++ IIE SV+PGGG+WLGGQLFSAMV+RKPAH+FL EL I Y+++ +YVV+KHAALF ST++SK+L  PNVKLFNA   EDL+ +         V GVVTNW LV+  H TQ  +DPNV+E                 V++S+ GH+GPFGA
Sbjct:   34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGA 243          

HSP 2 Score: 26.1794 bits (56), Expect = 8.605e-57
Identity = 11/36 (30.56%), Postives = 22/36 (61.11%), Query Frame = 1
Query:  745 GAFWCH*IKKVKNIEMIEEVPGMKALEMNFGKNAIV 852
            G F     K++ +I+  +++ GMK L+MN  ++ +V
Sbjct:  239 GPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVV 274          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.553e-27
Identity = 66/173 (38.15%), Postives = 97/173 (56.07%), Query Frame = 2
Query:  224 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSLLDPNVMEAKVVVSSCGH 742
            +K+ ++SR +   Y  D++   + D    GAG +G+   Y L+K    ++AI E+ +S GGG W GG  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN V  EDL+VK  RV G+V NW  V M   T   +DP  +EAK V+ S GH
Sbjct:    2 LKDVVISRAIVESYFKDLLNNLELDVAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKIVVQEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMVEVEDLVVKDDRVSGIVINWTPVKM---TGLHVDPLTVEAKYVIDSTGH 169          

HSP 2 Score: 27.335 bits (59), Expect = 6.553e-27
Identity = 12/30 (40.00%), Postives = 18/30 (60.00%), Query Frame = 1
Query:  790 MIEEVPGMKALEMNFGKNAIVRPTREVGPG 879
            +IE++PG  A+    G+   V  T+EV PG
Sbjct:  182 LIEKIPGEGAMWAEMGEKLTVENTKEVFPG 211          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.882e-26
Identity = 66/173 (38.15%), Postives = 97/173 (56.07%), Query Frame = 2
Query:  224 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSLLDPNVMEAKVVVSSCGH 742
            ++E  +SR +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W GG  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN +  EDL+VK  RV G+V NW  V M   T   +DP  +EAK V+ S GH
Sbjct:    2 LREVTISRAIIESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMIEVEDLVVKDNRVSGIVINWTPVLM---TGLHVDPLTVEAKYVIDSTGH 169          

HSP 2 Score: 26.9498 bits (58), Expect = 1.882e-26
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 1
Query:  790 MIEEVPGMKALEMNFGKNAIVRPTREVGPG 879
            +IE +PG  A+    G+   V  TREV PG
Sbjct:  182 LIERIPGEGAMWAEQGERLTVENTREVFPG 211          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.882e-26
Identity = 64/173 (36.99%), Postives = 97/173 (56.07%), Query Frame = 2
Query:  224 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSLLDPNVMEAKVVVSSCGH 742
            ++E  ++R +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W GG  F+ +VV+  A   LDE GI Y+E +    +  A    +TI SK++ +  VK+FN +  EDL++K  RV G+V NW  V M       +DP  +EAK V+ S GH
Sbjct:    2 LREVTITRAIVESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQDEAREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFNMIEVEDLVIKDNRVSGIVINWTPVLM---AGLHVDPLTIEAKYVIDSTGH 169          

HSP 2 Score: 27.335 bits (59), Expect = 1.882e-26
Identity = 12/30 (40.00%), Postives = 19/30 (63.33%), Query Frame = 1
Query:  790 MIEEVPGMKALEMNFGKNAIVRPTREVGPG 879
            +++E+PG  A+    G+   V+ TREV PG
Sbjct:  182 LLKEIPGEGAMWAEQGEKLTVKNTREVFPG 211          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.151e-26
Identity = 66/173 (38.15%), Postives = 96/173 (55.49%), Query Frame = 2
Query:  224 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSLLDPNVMEAKVVVSSCGH 742
            ++E  +SR +   Y  D++     D    GAG +G+   Y L+K    ++AI E+ +S GGG W G   F+ +VV++ A   LDE G+DY +  N + +  +    ST+ SK + +   K+FN V  EDL+VK GRV G+V NW  V M   T   +DP  +EAK VV S GH
Sbjct:    1 MREIEISRAIVEAYFNDLLQNLQLDIAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSVGGGIWGGAMGFNRVVVQESAREILDEFGVDYSQVGNGLYVLDSIELASTLASKAV-KAGAKIFNMVEVEDLVVKDGRVSGLVINWTPVMM---TGLHVDPLTVEAKFVVDSTGH 168          

HSP 2 Score: 23.0978 bits (48), Expect = 9.151e-26
Identity = 11/30 (36.67%), Postives = 16/30 (53.33%), Query Frame = 1
Query:  790 MIEEVPGMKALEMNFGKNAIVRPTREVGPG 879
            +I+ +PG   +    G+   V  TREV PG
Sbjct:  181 LIKAIPGEGPMWAEKGEELTVEHTREVFPG 210          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.685e-21
Identity = 59/176 (33.52%), Postives = 100/176 (56.82%), Query Frame = 2
Query:  224 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSL---LDPNVMEAKVVVSSCGH 742
            +++ ++SR +  RY   +    + D    GAG +GL+ AYEL+KN   ++A+ E+  +PGGG W GG +F+ +V+ K    FL E+ I+Y+ +++++V+  +  F S ++ +   +    +FN V+ ED+ V+ GRV GVV NW        T  L   +DP  ++A  VV   GH
Sbjct:    3 MRDVLISRLIVERYFEKLRNSLELDVAIVGAGPSGLTAAYELAKN-GFRVAVFEERNTPGGGIWGGGMMFNEIVLEKELENFLKEVEIEYEVKEDHIVV-DSVHFASGLLYR-ATKAGAIVFNNVSVEDVAVQNGRVCGVVVNWG------PTVRLGLHVDPITVKASFVVDGTGH 169          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.363e-20
Identity = 56/178 (31.46%), Postives = 98/178 (55.06%), Query Frame = 2
Query:  212 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSLLDPNVMEAKVVVSSCGHE 745
            K D IK   +SR +   YM D++ Y + D    G G +GL+  Y L++   +++A+ E+ +S GGG W GG +F+ +VV+      LDE GI  +  D    +  +   TST+ S+   +  +K+FN ++ ED++++   + G+V NW+ V M       +DP  + A+ V+ + GH+
Sbjct:    2 KLDDIK---ISRAIVEGYMEDLLDYMEMDVAIGGGGPSGLTAGYYLAR-AGLKVALFERKLSIGGGMWGGGMMFNKIVVQDEGREILDEFGIRSEPYDEGYHVADSVEATSTLCSR-ACQAGLKIFNLMSIEDVMIRDEGITGLVLNWSSVEM---AGLHVDPLTVRARAVIDATGHD 171          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.842e-18
Identity = 57/180 (31.67%), Postives = 95/180 (52.78%), Query Frame = 2
Query:  215 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI--DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSLLDPNVMEAKVVVSSCGHE 745
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WLGG L + + VR PA   LD+LG+  +YDE+++ + +  A    S +++        ++ N     D++V+    V G V NW  V       + +DP  +EA VVV + GH+
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMIT-AACDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHD 183          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.842e-18
Identity = 57/180 (31.67%), Postives = 95/180 (52.78%), Query Frame = 2
Query:  215 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI--DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSLLDPNVMEAKVVVSSCGHE 745
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WLGG L + + VR PA   LD+LG+  +YDE+++ + +  A    S +++        ++ N     D++V+    V G V NW  V       + +DP  +EA VVV + GH+
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMIT-AACDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPVHSLPRELTCVDPIALEADVVVDATGHD 183          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_METAC (Putative thiazole biosynthetic enzyme OS=Methanosarcina acetivorans GN=MA_2851 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.080e-17
Identity = 58/179 (32.40%), Postives = 96/179 (53.63%), Query Frame = 2
Query:  224 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA---RPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSL-LDPNVMEAKVVVSSCGHE 745
            + E I++R +   Y    + Y D D    G G A L  A  L++   +++A+ EQ +S GGG W GG +F  +VV++ A   LD+ GI Y E ++   + ++       + KL+A       ++FN V+ ED++++   RV G+V NW  V+    TQ L +DP ++  K+V+   GHE
Sbjct:    3 LDEVIITRAIFDEYSKTFLDYTDIDVALVGGGPANLVAAKYLAE-AGVKVALYEQKLSLGGGMWAGGMMFPRIVVQEEATRILDDFGIRYKEYESGYYVANSV----ESVGKLIAGATSAGAEVFNLVSFEDIMIRENDRVTGIVINWGPVT----TQRLHVDPLMIRTKLVIDGTGHE 172          
The following BLAST results are available for this feature:
BLAST of DY259874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
THI4_YEAST8.605e-5753.33Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRFU6.553e-2738.15Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB1.882e-2638.15Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRHO1.882e-2636.99Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO9.151e-2638.15Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_THEMA4.685e-2133.52Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_METTH1.363e-2031.46Putative thiazole biosynthetic enzyme OS=Methanoba... [more]
THI4_HALSA2.842e-1831.67Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS32.842e-1831.67Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_METAC1.080e-1732.40Putative thiazole biosynthetic enzyme OS=Methanosa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YH15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259874 ID=DY259874; Name=DY259874; organism=Citrus clementina; type=EST; length=901bp
GGAGGGGTTAAAAAAAAAAAACATGGCAGCCATGACTTCTACAGCTTTCG
CTCCTTCAGTTTCGTCCACCACCAATAAGCTCTTTGACTCATCCTTTCAT
GGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCAAATCTTC
TCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTTATGACT
TGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTCTCGTGAA
ATGACACGCAGGTACATGACGGACATGATCACTTATGCTGACACTGATGT
GGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATGAGCTCA
GCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGTTAGCCCC
GGCGGTGGCGCGTGGCTCGGTGGACAGCTCTTCTCTGCCATGGTTGTGCG
CAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACTACGATGAGC
AAGACAACTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCACTATA
ATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGCAGTGGC
AGCCGAGGACTTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTGACCA
ACTGGGCGTTGGTGTCAATGAATCACGATACACAGTCTTTGCTGGATCCC
AATGTAATGGAAGCGAAGGTGGTTGTGAGCTCCTGTGGCCATGAGGGGCC
TTTTGGTGCCACTGAATAAAAAAGGTGAAGAATATCGAAATGATTGAGGA
AGTGCCTGGAATGAAGGCACTGGAAATGAACTTCGGCAAAAATGCTATTG
TAAGGCCAACCAGGGAGGTTGGCCCGGGAGAAAGTATACCGCATGGAATT
T
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