DY259874

Overview
NameDY259874
Unique NameDY259874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length901
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15114 contig Ccv1_Contig15114:71..970. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_METMP (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis GN=MMP1352 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.186e-17
Identity = 59/179 (32.96%), Postives = 89/179 (49.72%), Query Frame = 2
Query:  230 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSL-LDPNVMEAKVVVSSCGHE 745
            E  V++ + +      +   D D    GAG +GL+ A  L++N  ++  ++E+ +S GGG W GG  F  +VV KPA   L E GI  DE     VI    LFT+    + +KL         K+   +  EDLI+K  +V GVV    + S + +   L +DP  + AK V+ S GH+
Sbjct:    9 EVAVTKSILKSTFDMWMDLIDVDVVIVGAGPSGLTAAKYLAQN-GVKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADEILREAGIKLDE-----VIGEPELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKVSGVV----IQSYSIEKAGLHIDPITISAKYVIDSTGHD 177          

HSP 2 Score: 33.4982 bits (75), Expect = 1.186e-17
Identity = 16/34 (47.06%), Postives = 24/34 (70.59%), Query Frame = 1
Query:  778 KNIEMIEEVPGMKALEMNFGKNAIVRPTREVGPG 879
            KN ++  EVPG K++  + G+N++ R TREV PG
Sbjct:  187 KNKDLGIEVPGEKSMWADKGENSLTRNTREVFPG 220          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_METMJ (Putative thiazole biosynthetic enzyme OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_2251 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.104e-17
Identity = 55/176 (31.25%), Postives = 87/176 (49.43%), Query Frame = 2
Query:  224 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSLLDPNVMEAKVVVSSCGHE 745
            + E  +SR +       +I + + D    G G +GL+CA  L +   ++ A+IE+ +S GGG W GG +F  +VV++ A   LD  GI Y   ++ Y V K         ++       V+ FN    ED++++G GR+GG+V NW  V M       +DP  M     V + GH+
Sbjct:    3 LNEVTISRAILEEQHRALIDHLEMDAAVIGGGPSGLACAALLGEK-GVKCALIEKKLSIGGGMWGGGMMFPRIVVQEDARRLLDRFGIAYKAFEEGYYVAKSVEAVAK--LTAAACDAGVEFFNLTTVEDVMIRGDGRIGGLVVNWTPVDM---AGLHVDPLTMACTCTVDATGHD 172          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.104e-17
Identity = 61/183 (33.33%), Postives = 95/183 (51.91%), Query Frame = 2
Query:  212 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDN----YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSLLDPNVMEAKVVVSSCGHE 745
            +F  + E+ V+R + + +  + I   DT+    G G +GL  A EL++   + + I+E++   GGG WLGG L + + VR PA   LDEL + Y+E D     YV     A+ +S I S   A   V+  N     D++ +   RVGG+V NW  V       + +DP  +E+ +VV S GH+
Sbjct:    5 EFADVSEAQVTRAIAKDWGNEFIDRVDTEVIIVGGGPSGLVTAKELAER-GVDVTIVEKNNYLGGGFWLGGFLMNKVTVRDPAQSVLDELDVPYEESDEASGLYVADGPHAV-SSLIKSACDAGAEVQ--NMTEFTDVVTRENHRVGGIVLNWTPVHALPRELTCVDPVAVESDLVVDSTGHD 183          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_HALMA (Putative thiazole biosynthetic enzyme OS=Haloarcula marismortui GN=rrnAC1782 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.104e-17
Identity = 55/183 (30.05%), Postives = 96/183 (52.46%), Query Frame = 2
Query:  212 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY----DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSLLDPNVMEAKVVVSSCGHE 745
            +F  + E+ V+R + + +  + + ++D+D    G G +GL  A EL++   +Q+ ++E++   GGG WLGG L + + VR PA   LDEL +D+    D +  YV     A    + + K       K+ N     D++++   RVGG+V NW  V       + +DP  +EA +V+ + GH+
Sbjct:    9 QFSDVGEAEVTRAIGQEWTEEFMDFSDSDVIIVGGGPSGLMAAKELAER-GVQVMVVEKNNYLGGGFWLGGFLMNKVTVRDPAQQVLDELEVDHKRSKDSEGLYVANGPEA---CSGLIKAACDAGAKMQNMTEFTDIVIREDHRVGGIVMNWTPVHALPREITCVDPIAVEADLVIDATGHD 187          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_METMA (Putative thiazole biosynthetic enzyme OS=Methanosarcina mazei GN=MM_0222 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.144e-17
Identity = 58/179 (32.40%), Postives = 94/179 (52.51%), Query Frame = 2
Query:  224 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA---RPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSL-LDPNVMEAKVVVSSCGHE 745
            + E I++R +   Y    + Y D D    G G A L  A  L++    ++AI EQ +S GGG W GG +F  +VV++ A   LD+ GI Y E +    + ++       + KL+A       ++FN V+ ED++++   RV G+V NW  V+    TQ L +DP ++  K+V+   GH+
Sbjct:    3 LDEVIITRAIFEEYSKTFLEYTDIDVALVGGGPANLVAAKYLAE-AGAKVAIYEQKLSLGGGMWAGGMMFPRIVVQEEACRVLDDFGIRYKEYEPGYFVANSV----ESVGKLIAGATSAGAEVFNLVSFEDIMIRENDRVTGIVINWGPVT----TQRLHVDPLMIRTKLVIDGTGHD 172          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_METM7 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0597 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.677e-17
Identity = 57/179 (31.84%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  230 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSL-LDPNVMEAKVVVSSCGHE 745
            E  V++ + +      +   D D    GAG +GL+ A  L++N  ++  ++E+ +S GGG W GG  F  +VV KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV    + S   +   L +DP  + AK V+ S GH+
Sbjct:    9 EVAVTKSILKSTFNMWMDIIDVDVVIIGAGPSGLTAAKYLAQN-GVKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADEILREAGIKLDEVDG-----EDELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVV----IQSYAIEKAGLHIDPLTISAKYVIDSTGHD 177          

HSP 2 Score: 32.7278 bits (73), Expect = 9.677e-17
Identity = 15/34 (44.12%), Postives = 23/34 (67.65%), Query Frame = 1
Query:  778 KNIEMIEEVPGMKALEMNFGKNAIVRPTREVGPG 879
            KN ++  EVPG K++    G+N++ R TRE+ PG
Sbjct:  187 KNKDLGIEVPGEKSMWAEKGENSLTRNTREIFPG 220          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_METBF (Putative thiazole biosynthetic enzyme OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A2100 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.194e-16
Identity = 57/176 (32.39%), Postives = 89/176 (50.57%), Query Frame = 2
Query:  224 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSLLDPNVMEAKVVVSSCGHE 745
            + E I++R +   Y    + Y + D    G G A L  A  L++    ++AI EQ +S GGG W GG +F  +VV++ A   LD+ GI Y E Q  Y V          I     A    ++FN V+ ED++++   RV G+V NW  V++    +  +DP ++  K+V+   GHE
Sbjct:    3 LDEVIITRAIFDEYSKTFLDYTEVDVALIGGGPANLVAARYLAE-AGAKVAIYEQKLSLGGGMWAGGMMFPRIVVQEEACRILDDFGIRYKEYQPGYYVANSVESVGKLISGATSA--GAEVFNLVSFEDVMIRENDRVTGIVVNWGPVTVQ---RLHVDPLMIRTKLVIDGTGHE 172          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_DESOH (Putative thiazole biosynthetic enzyme OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=Dole_2426 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.194e-16
Identity = 56/175 (32.00%), Postives = 90/175 (51.43%), Query Frame = 2
Query:  224 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD--EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSLLDPNVMEAKVVVSSCGH 742
            + E  +SR +  R+   +I   + D    G G +GL  A+ L++    ++A+ E+ +S GGG W G  LF+ +VV+K A   LD + I Y    +D Y      A+ T T  +   A+  V +FN V  ED++++  R+ G+V NW+ V M       +DP  M A  V+ + GH
Sbjct:    3 LNEVTISRAIIDRFYEKLIANLEVDVAVVGGGPSGLVAAWRLARAGR-KVALFERKLSIGGGMWGGAMLFNEIVVQKSALHVLDAMEIGYRLYAEDYYTADAVEAISTLTSQA---AKAGVAIFNCVTVEDVMIRPDRIVGLVLNWSPVEM---AGLHVDPLAMRASFVIDATGH 170          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_NATPD (Putative thiazole biosynthetic enzyme OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP5174A PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.037e-16
Identity = 52/180 (28.89%), Postives = 94/180 (52.22%), Query Frame = 2
Query:  212 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD-EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSLLDPNVMEAKVVVSSCGHE 745
            +F  + E+ V+R + + +  + + ++D+D    G G +GL  A ELS+   +Q  ++E++   GGG WLGG L + + VR PA   L++L +D+   QD+  +         + + K       K+ N     D++++   RVGG+V NW  V       + +DP  +EA +V+ + GH+
Sbjct:    6 QFSDVGEAEVTRAIGQEWTEEFMDFSDSDVIIVGGGPSGLMAAKELSER-GVQTMVVEKNNYLGGGFWLGGFLMNKVTVRDPAQNVLEDLDVDFKRSQDSEGLYVANGPEACSGLIKAACDAGAKMQNMTEFTDIVIREDHRVGGIVMNWTPVHALPREITCVDPIAVEADLVIDATGHD 184          
BLAST of DY259874 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.475e-16
Identity = 51/177 (28.81%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  215 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSLLDPNVMEAKVVVSSCGHE 745
            F  + E+ V+  +   + + +  +  +D    GAG AGL+ A+ L++    ++ I+EQ+   GGG WLGG   + + +R PA   LDEL + Y+     +      L  + + ++ L     ++ N    +D+IV+  RV GVV NW+ V       + +DP  + A+ VV + GH+
Sbjct:    3 FARVNEADVTEAILDGFYSSLKKHLRSDVIVVGAGPAGLTAAWRLAE-AGARVLIVEQNNYLGGGLWLGGYFMNPVTIRAPAQRILDELEVPYEAVKPGLYRTKGPLLAAKLAARAL-EAGAEVLNLTMLDDVIVENSRVAGVVVNWSPVQGLPRQITCVDPVGLRAEYVVDATGHD 177          
The following BLAST results are available for this feature:
BLAST of DY259874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
THI4_METMP1.186e-1732.96Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METMJ4.104e-1731.25Putative thiazole biosynthetic enzyme OS=Methanocu... [more]
THI4_HALWD4.104e-1733.33Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_HALMA4.104e-1730.05Putative thiazole biosynthetic enzyme OS=Haloarcul... [more]
THI4_METMA9.144e-1732.40Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_METM79.677e-1731.84Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METBF1.194e-1632.39Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_DESOH1.194e-1632.00Putative thiazole biosynthetic enzyme OS=Desulfoco... [more]
THI4_NATPD2.037e-1628.89Putative thiazole biosynthetic enzyme OS=Natronomo... [more]
THI4_AERPE3.475e-1628.81Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YH15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259874 ID=DY259874; Name=DY259874; organism=Citrus clementina; type=EST; length=901bp
GGAGGGGTTAAAAAAAAAAAACATGGCAGCCATGACTTCTACAGCTTTCG
CTCCTTCAGTTTCGTCCACCACCAATAAGCTCTTTGACTCATCCTTTCAT
GGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCAAATCTTC
TCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTTATGACT
TGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTCTCGTGAA
ATGACACGCAGGTACATGACGGACATGATCACTTATGCTGACACTGATGT
GGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATGAGCTCA
GCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGTTAGCCCC
GGCGGTGGCGCGTGGCTCGGTGGACAGCTCTTCTCTGCCATGGTTGTGCG
CAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACTACGATGAGC
AAGACAACTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCACTATA
ATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGCAGTGGC
AGCCGAGGACTTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTGACCA
ACTGGGCGTTGGTGTCAATGAATCACGATACACAGTCTTTGCTGGATCCC
AATGTAATGGAAGCGAAGGTGGTTGTGAGCTCCTGTGGCCATGAGGGGCC
TTTTGGTGCCACTGAATAAAAAAGGTGAAGAATATCGAAATGATTGAGGA
AGTGCCTGGAATGAAGGCACTGGAAATGAACTTCGGCAAAAATGCTATTG
TAAGGCCAACCAGGGAGGTTGGCCCGGGAGAAAGTATACCGCATGGAATT
T
back to top