DY259883

Overview
NameDY259883
Unique NameDY259883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_METRJ (60 kDa chaperonin OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=groL PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.849e-14
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 3 
Query:  213 KGEFYMREDAEVPDQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            +G  Y+       D ++G  +A  A V ++ + A+ +++ +++A  GT +ANGD+ IGE+IA A +K     +  + + KT  + EL +  GM  DRGYLSPYFITN +     L DP
Sbjct:  102 EGAKYVAAGINPMDLKRGIDLATQAAVKDIIARAKKVSTSDEVAQVGTISANGDKEIGEMIAHAMQKVGNEGVITVEEAKTAET-ELDVVEGMQFDRGYLSPYFITNAEKMVAELEDP 218

HSP 2 Score: 21.557 bits (44), Expect = 2.849e-14
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1 
Query:  559 EIPYIMILEKKVSN 600
            E PYI+I EKK+S+
Sbjct:  216 EDPYILIHEKKLSS 229
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_METPB (60 kDa chaperonin OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=groL PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.849e-14
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A  A V ++ + A+ + S E++A  GT +ANGD+ IGE+IA A +K     +  + + KT  + EL +  GM  DRGYLSPYF+TN +     L DP
Sbjct:  115 DLKRGIDLATQAAVKDITARAKKVASSEEVAQVGTISANGDKEIGEMIAHAMQKVGNEGVITVEEAKTAET-ELDVVEGMQFDRGYLSPYFVTNAEKMVAELEDP 218

HSP 2 Score: 21.557 bits (44), Expect = 2.849e-14
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1 
Query:  559 EIPYIMILEKKVSN 600
            E PYI+I EKK+S+
Sbjct:  216 EDPYILIHEKKLSS 229
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH602_RHILO (60 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.849e-14
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G   A++A+V  L + A+ +T  ++IA  GT +ANGD  IG  +A+A +K     +  + + KT  + EL++  GM  DRGYLSPYFITN       L +P
Sbjct:  115 DLKRGIDKAVEAIVQELKTNARKVTRNDEIAQVGTISANGDAEIGRFLAEAMQKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFITNQDKMRVELEEP 218

HSP 2 Score: 23.483 bits (49), Expect = 2.849e-14
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:  541 RKNVFYEIPYIMILEKKVSN 600
            +  V  E PY++I EKK+SN
Sbjct:  210 KMRVELEEPYVLIHEKKLSN 229
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH601_BRASO (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ORS278) GN=groL1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.849e-14
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A++A+V +L + A+ ITS ++IA  GT +ANGD  IG  +A+A +K  GN   +  +       EL++  GM  DRGY+SPYF+TN +     L DP
Sbjct:  115 DLKRGIDLAVEAIVKDLKAHAKKITSNDEIAQVGTISANGDSEIGRFLAEAMQK-VGNEGVITVEEAKSLDTELEVVEGMQFDRGYVSPYFVTNSEKMRVELEDP 218

HSP 2 Score: 21.557 bits (44), Expect = 2.849e-14
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1 
Query:  541 RKNVFYEIPYIMILEKKVS 597
            +  V  E PYI+I EKK+S
Sbjct:  210 KMRVELEDPYILIHEKKLS 228
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_METSB (60 kDa chaperonin OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=groL PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.379e-14
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A+ A+V +L + ++ +TS E+IA  GT +ANGD+ +GE+I+ A +K  GN   +  +       EL +  GM  DRGYLSPYFITN +     L DP
Sbjct:  115 DLKRGIDIAVAAVVADLKANSKKVTSNEEIAQVGTISANGDKSVGEMISTAMQK-VGNEGVITVEEAKSLETELDVVEGMQFDRGYLSPYFITNAEKMIAELEDP 218
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_BART1 (60 kDa chaperonin OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=groL PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.700e-14
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G   A+D +V NL+  A+ I +  +IA  GT +ANG   IG++IA A EK     +  + + KT  + EL++  GM  DRGYLSPYF+TN +     L DP
Sbjct:  115 DLKRGIDAAVDEVVANLFKKAKKIQTSAEIAQVGTISANGAAEIGKMIADAMEKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNAEKMVADLDDP 218

HSP 2 Score: 22.7126 bits (47), Expect = 3.700e-14
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  565 PYIMILEKKVSN 600
            PYI+I EKK+SN
Sbjct:  218 PYILIHEKKLSN 229
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_BARQU (60 kDa chaperonin OS=Bartonella quintana GN=groL PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.700e-14
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G   A++ +VGNL+  A+ I +  +IA  GT +ANG   IG++IA A EK     +  + + KT  + EL++  GM  DRGYLSPYF+TN       L DP
Sbjct:  115 DLKRGIDAAVEEVVGNLFKKAKKIQTSAEIAQVGTISANGAAEIGKMIADAMEKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNADKMVADLDDP 218

HSP 2 Score: 22.7126 bits (47), Expect = 3.700e-14
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  565 PYIMILEKKVSN 600
            PYI+I EKK+SN
Sbjct:  218 PYILIHEKKLSN 229
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_BARHE (60 kDa chaperonin OS=Bartonella henselae GN=groL PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.700e-14
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G   A+D +V NL+  A+ I +  +IA  GT +ANG   IG++IA A EK     +  + + KT  + EL++  GM  DRGYLSPYF+TN +     L DP
Sbjct:  115 DLKRGIDAAVDEVVANLFKKAKKIQTSAEIAQVGTISANGAAEIGKMIADAMEKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNAEKMVADLDDP 218

HSP 2 Score: 22.7126 bits (47), Expect = 3.700e-14
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  565 PYIMILEKKVSN 600
            PYI+I EKK+SN
Sbjct:  218 PYILIHEKKLSN 229
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH601_RHISN (60 kDa chaperonin 1 OS=Rhizobium sp. (strain NGR234) GN=groL1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.701e-14
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G   A+DA+V  L + A+ +T  ++IA  GT +ANGD  IG  +A+A EK     +  + + KT  + EL++  GM  DRGYLSPYF+TN       L +P
Sbjct:  115 DLKRGIDKAVDAIVEELKTNARRVTKNDEIAQVGTISANGDIEIGRFLAEAVEKVGNEGVITVEEAKTAVT-ELEVVEGMQFDRGYLSPYFVTNPDKMRVELEEP 218

HSP 2 Score: 23.0978 bits (48), Expect = 3.701e-14
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:  541 RKNVFYEIPYIMILEKKVSN 600
            +  V  E PY++I EKK+SN
Sbjct:  210 KMRVELEEPYLLIHEKKLSN 229
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH604_RHIEC (60 kDa chaperonin 4 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL4 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.701e-14
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A+ A+V  L + A+ I++  +IA  GT +ANGD  IG  +A+A +K   + +  + + KT  + EL++  GM  DRGYLSPYF+TN         DP
Sbjct:  115 DLKRGIDLAVSAIVEELKANARKISNNAEIAQVGTISANGDAEIGRFLAEAVQKVGNDGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNADKMRVEFEDP 218

HSP 2 Score: 25.409 bits (54), Expect = 3.701e-14
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:  541 RKNVFYEIPYIMILEKKVSN 600
            +  V +E PYI+I EKK+SN
Sbjct:  210 KMRVEFEDPYILIHEKKLSN 229
The following BLAST results are available for this feature:
BLAST of DY259883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 296
Match NameE-valueIdentityDescription
CH60_METRJ2.849e-1436.4460 kDa chaperonin OS=Methylobacterium radiotoleran... [more]
CH60_METPB2.849e-1440.0060 kDa chaperonin OS=Methylobacterium populi (stra... [more]
CH602_RHILO2.849e-1439.0560 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=... [more]
CH601_BRASO2.849e-1440.0060 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ... [more]
CH60_METSB3.379e-1440.9560 kDa chaperonin OS=Methylocella silvestris (stra... [more]
CH60_BART13.700e-1440.9560 kDa chaperonin OS=Bartonella tribocorum (strain... [more]
CH60_BARQU3.700e-1440.9560 kDa chaperonin OS=Bartonella quintana GN=groL P... [more]
CH60_BARHE3.700e-1440.9560 kDa chaperonin OS=Bartonella henselae GN=groL P... [more]
CH601_RHISN3.701e-1440.0060 kDa chaperonin 1 OS=Rhizobium sp. (strain NGR23... [more]
CH604_RHIEC3.701e-1438.1060 kDa chaperonin 4 OS=Rhizobium etli (strain CFN ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YI01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259883 ID=DY259883; Name=DY259883; organism=Citrus clementina; type=EST; length=929bp
TTCTGTGTCATGTTCATTTAACTCGGAGCAGACAGTATACCGCGGCGGAA
GTCACTAAAAGATTTTTGGATTGTGAAACATCTTCTGGATTTTCTTAATT
AAGAAATTAGATTTGCTGTGAATGGGAATGGAGTTAATTAATGGATACAG
ATCATCTGATCAAATTCAATTGACATCTATCTTCTGTCTGCAGGCACCAA
TTCTAAAGTTAAAAGGGAGAATTTTATATGCGGGAGGATGCGGAAGTGCC
AGACCAAAGACAAGGGGCTAGAATGGCAATTGATGCACTTGTGGGAAATT
TATACAGCACAGCACAACCCATCACATCATTCGAACAAATAGCCCTGTTT
GGAACGGCTGCAGCAAATGGTGACAGAGTGATTGGCGAGCTCATAGCCAA
GGCTTTTGAGAAAGGTTGGGGAAACAATCTTCATGTGTTAGCTGATCGGA
AAACACCACCCAGTATTGAACTTCAGTTGTATTGGGGAATGACCCTAGAC
AGGGGCTATTTGTCACCTTACTTCATCACCAATCATAAGACGAAAGAATG
TGTTTTACGAGATCCCTTATATCATGATCCTTGAGAAAAAGGTTTCAAAC
TGCGTTCTTCTTTGACTTATTGGCAGAGATTGAACCATTTAGAAAATATA
ATGGCACAAATGTACTGATCATTGCGAAAAAATTGAAAAATGACCTCCTA
ACAAGTCTGGTCCTAAATGGAAAGTCCTACAGACAACAAAGGGCTGGGTC
CAACAACCATCTGGAATTTGGAAAAACTACGAAGGCCAATCCTTTGGGAA
CATAGTCAAATTCCCTTAAGGGGACCGTCAGGGCCAGGAAACAATTTTTT
CACCGCCCCCCCCCGGCCCCCCCCTCCCAAAACCCCCGCCATCTCACACC
ACCGAACGTGTTCCTCCTTTTTGGTACGC
back to top