DY259883

Overview
NameDY259883
Unique NameDY259883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH601_RHILO (60 kDa chaperonin 1 OS=Rhizobium loti GN=groL1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.310e-13
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G   A+ A+V  + + A+ + S  +IA  GT AANGD  +G +IAKA +K   + +  + + KT  + EL +  GM  DRGYLSPYF+TN       L +P
Sbjct:  115 DLKRGIDQAVAAVVVEIKAKAKKVKSSAEIAQVGTIAANGDATVGAMIAKAMDKVGNDGVITVEEAKTAET-ELDVVEGMQFDRGYLSPYFVTNADKMRVELEEP 218

HSP 2 Score: 21.9422 bits (45), Expect = 2.310e-13
Identity = 9/20 (45.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:  541 RKNVFYEIPYIMILEKKVSN 600
            +  V  E PY++I EKK+ N
Sbjct:  210 KMRVELEEPYVLIHEKKLGN 229
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH602_VIBVY (60 kDa chaperonin 2 OS=Vibrio vulnificus (strain YJ016) GN=groL2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.311e-13
Identity = 44/105 (41.90%), Postives = 60/105 (57.14%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G   A+D+ V  L + AQP +  E I   G+ +AN DR IG++IA+A EK  G N  +  +     S EL +  GM  DRGYLSPYFITN  +    L +P
Sbjct:  115 DLKRGIDKAVDSAVEKLRAMAQPCSDKESITQVGSISANSDRAIGDIIAEAMEK-VGRNGVITVEEGQGLSNELSVVEGMQFDRGYLSPYFITNQDSGAVELDNP 218

HSP 2 Score: 21.557 bits (44), Expect = 2.311e-13
Identity = 7/12 (58.33%), Postives = 12/12 (100.00%), Query Frame = 1 
Query:  565 PYIMILEKKVSN 600
            PYI++++KKVS+
Sbjct:  218 PYILLVDKKVSS 229
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH602_VIBVU (60 kDa chaperonin 2 OS=Vibrio vulnificus GN=groL2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.311e-13
Identity = 44/105 (41.90%), Postives = 60/105 (57.14%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G   A+D+ V  L + AQP +  E I   G+ +AN DR IG++IA+A EK  G N  +  +     S EL +  GM  DRGYLSPYFITN  +    L +P
Sbjct:  115 DLKRGIDKAVDSAVEKLRAMAQPCSDKESITQVGSISANSDRAIGDIIAEAMEK-VGRNGVITVEEGQGLSNELSVVEGMQFDRGYLSPYFITNQDSGAVELDNP 218

HSP 2 Score: 21.557 bits (44), Expect = 2.311e-13
Identity = 7/12 (58.33%), Postives = 12/12 (100.00%), Query Frame = 1 
Query:  565 PYIMILEKKVSN 600
            PYI++++KKVS+
Sbjct:  218 PYILLVDKKVSS 229
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH603_RHIME (60 kDa chaperonin 3 OS=Rhizobium meliloti GN=groL3 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.861e-13
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  + + A++  + + A  + S  +IA  GT AANGD  +GE+IA+A EK  GN   +  +       EL +  GM  DRGYLSPYF+TN +     L DP
Sbjct:  115 DLKRGIDLGVAAVLAEIKARATKVISSSEIAQVGTIAANGDAGVGEMIARAMEK-VGNEGVITVEEARTADTELDVVEGMQFDRGYLSPYFVTNAEKMRVELEDP 218
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH601_RHOP2 (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain HaA2) GN=groL1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.861e-13
Identity = 41/104 (39.42%), Postives = 61/104 (58.65%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRD 563
            D R+G  +A+ A+V ++   A+P+ S  +IA  GT +ANGD  IG++IA+A +K  GN   +  +       E+ +  GM  DRGYLSPYF+TN +     L D
Sbjct:  115 DLRRGIEIAVQAVVKDIQKRARPVASSAEIAQVGTISANGDAPIGKMIAQAMQK-VGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDD 217
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_RICRS (60 kDa chaperonin OS=Rickettsia rickettsii (strain Sheila Smith) GN=groL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.999e-13
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A++A+V  +  +++ I S E+IA  GT ++NGD+ IGE IAKA E+     +  + + K   S ++++  GM  DRGYLSPYF+TN +     L +P
Sbjct:  115 DLKRGMDLAVNAVVEEIKKSSKKINSQEEIAQVGTISSNGDKEIGEKIAKAMEEVGKEGVITVEEAKN-FSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENP 218

HSP 2 Score: 22.3274 bits (46), Expect = 2.999e-13
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 1 
Query:  559 EIPYIMILEKKVSN 600
            E P+I++ EKK+SN
Sbjct:  216 ENPFILLFEKKLSN 229
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_RICRO (60 kDa chaperonin OS=Rickettsia rickettsii (strain Iowa) GN=groL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.999e-13
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A++A+V  +  +++ I S E+IA  GT ++NGD+ IGE IAKA E+     +  + + K   S ++++  GM  DRGYLSPYF+TN +     L +P
Sbjct:  115 DLKRGMDLAVNAVVEEIKKSSKKINSQEEIAQVGTISSNGDKEIGEKIAKAMEEVGKEGVITVEEAKN-FSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENP 218

HSP 2 Score: 22.3274 bits (46), Expect = 2.999e-13
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 1 
Query:  559 EIPYIMILEKKVSN 600
            E P+I++ EKK+SN
Sbjct:  216 ENPFILLFEKKLSN 229
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_RICPU (60 kDa chaperonin OS=Rickettsia peacockii (strain Rustic) GN=groL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.999e-13
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A++A+V  +  +++ I S E+IA  GT ++NGD+ IGE IAKA E+     +  + + K   S ++++  GM  DRGYLSPYF+TN +     L +P
Sbjct:  115 DLKRGMDLAVNAVVEEIKKSSKKINSQEEIAQVGTISSNGDKEIGEKIAKAMEEVGKEGVITVEEAKN-FSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENP 218

HSP 2 Score: 22.3274 bits (46), Expect = 2.999e-13
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 1 
Query:  559 EIPYIMILEKKVSN 600
            E P+I++ EKK+SN
Sbjct:  216 ENPFILLFEKKLSN 229
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_RICM5 (60 kDa chaperonin OS=Rickettsia massiliae (strain Mtu5) GN=groL PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.999e-13
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A++A+V  +  +++ I S E+IA  GT ++NGD+ IGE IAKA E+     +  + + K   S ++++  GM  DRGYLSPYF+TN +     L +P
Sbjct:  115 DLKRGMDLAVNAVVEEIKKSSKKINSQEEIAQVGTISSNGDKEIGEKIAKAMEEVGKEGVITVEEAKN-FSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENP 218

HSP 2 Score: 22.3274 bits (46), Expect = 2.999e-13
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 1 
Query:  559 EIPYIMILEKKVSN 600
            E P+I++ EKK+SN
Sbjct:  216 ENPFILLFEKKLSN 229
[Close]
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_RICFE (60 kDa chaperonin OS=Rickettsia felis GN=groL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.999e-13
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 3 
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A++A+V  +  +++ I S E+IA  GT ++NGD+ IGE IAKA E+     +  + + K   S ++++  GM  DRGYLSPYF+TN +     L +P
Sbjct:  114 DLKRGMDLAVNAVVEEIKKSSKKINSQEEIAQVGTISSNGDKEIGEKIAKAMEEVGKEGVITVEEAKN-FSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENP 217

HSP 2 Score: 22.3274 bits (46), Expect = 2.999e-13
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 1 
Query:  559 EIPYIMILEKKVSN 600
            E P+I++ EKK+SN
Sbjct:  215 ENPFILLFEKKLSN 228
The following BLAST results are available for this feature:
BLAST of DY259883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 296
Match NameE-valueIdentityDescription
CH601_RHILO2.310e-1339.0560 kDa chaperonin 1 OS=Rhizobium loti GN=groL1 PE=... [more]
CH602_VIBVY2.311e-1341.9060 kDa chaperonin 2 OS=Vibrio vulnificus (strain Y... [more]
CH602_VIBVU2.311e-1341.9060 kDa chaperonin 2 OS=Vibrio vulnificus GN=groL2 ... [more]
CH603_RHIME2.861e-1339.0560 kDa chaperonin 3 OS=Rhizobium meliloti GN=groL3... [more]
CH601_RHOP22.861e-1339.4260 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_RICRS2.999e-1338.1060 kDa chaperonin OS=Rickettsia rickettsii (strain... [more]
CH60_RICRO2.999e-1338.1060 kDa chaperonin OS=Rickettsia rickettsii (strain... [more]
CH60_RICPU2.999e-1338.1060 kDa chaperonin OS=Rickettsia peacockii (strain ... [more]
CH60_RICM52.999e-1338.1060 kDa chaperonin OS=Rickettsia massiliae (strain ... [more]
CH60_RICFE2.999e-1338.1060 kDa chaperonin OS=Rickettsia felis GN=groL PE=3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YI01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259883 ID=DY259883; Name=DY259883; organism=Citrus clementina; type=EST; length=929bp
TTCTGTGTCATGTTCATTTAACTCGGAGCAGACAGTATACCGCGGCGGAA
GTCACTAAAAGATTTTTGGATTGTGAAACATCTTCTGGATTTTCTTAATT
AAGAAATTAGATTTGCTGTGAATGGGAATGGAGTTAATTAATGGATACAG
ATCATCTGATCAAATTCAATTGACATCTATCTTCTGTCTGCAGGCACCAA
TTCTAAAGTTAAAAGGGAGAATTTTATATGCGGGAGGATGCGGAAGTGCC
AGACCAAAGACAAGGGGCTAGAATGGCAATTGATGCACTTGTGGGAAATT
TATACAGCACAGCACAACCCATCACATCATTCGAACAAATAGCCCTGTTT
GGAACGGCTGCAGCAAATGGTGACAGAGTGATTGGCGAGCTCATAGCCAA
GGCTTTTGAGAAAGGTTGGGGAAACAATCTTCATGTGTTAGCTGATCGGA
AAACACCACCCAGTATTGAACTTCAGTTGTATTGGGGAATGACCCTAGAC
AGGGGCTATTTGTCACCTTACTTCATCACCAATCATAAGACGAAAGAATG
TGTTTTACGAGATCCCTTATATCATGATCCTTGAGAAAAAGGTTTCAAAC
TGCGTTCTTCTTTGACTTATTGGCAGAGATTGAACCATTTAGAAAATATA
ATGGCACAAATGTACTGATCATTGCGAAAAAATTGAAAAATGACCTCCTA
ACAAGTCTGGTCCTAAATGGAAAGTCCTACAGACAACAAAGGGCTGGGTC
CAACAACCATCTGGAATTTGGAAAAACTACGAAGGCCAATCCTTTGGGAA
CATAGTCAAATTCCCTTAAGGGGACCGTCAGGGCCAGGAAACAATTTTTT
CACCGCCCCCCCCCGGCCCCCCCCTCCCAAAACCCCCGCCATCTCACACC
ACCGAACGTGTTCCTCCTTTTTGGTACGC
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