DY259892

Overview
NameDY259892
Unique NameDY259892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259892_ssr93 microsatellite DY259892_ssr93:93..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1346 contig Ccv1_Contig1346:1..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY259892 vs. ExPASy Swiss-Prot
Match: PSAE_SYNJA (Photosystem I reaction center subunit IV OS=Synechococcus sp. (strain JA-3-3Ab) GN=psaE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 3 
Query:  375 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 542
            V++LR+ESYWY  +G+V AVD      YPV+VRF+K+NY N++TNN+  DE+E V+
Sbjct:    9 VRVLRKESYWYRDVGTVAAVDTSG-ILYPVIVRFDKINYYNINTNNFREDELEVVE 63
[Close]
BLAST of DY259892 vs. ExPASy Swiss-Prot
Match: PSAE_TRIEI (Photosystem I reaction center subunit IV OS=Trichodesmium erythraeum (strain IMS101) GN=psaE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 3 
Query:  375 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYA-------NVSTNNYALDEIEEV 539
            V+ILR+ESYWY  +G+V +VD+    +YPV+VRF+KVNYA        V+TNN+A+DE+ E+
Sbjct:    8 VRILRKESYWYQDVGTVASVDKS-GIKYPVIVRFDKVNYAGSSGSPTGVNTNNFAIDEVVEI 68
The following BLAST results are available for this feature:
BLAST of DY259892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PSAE_SYNJA4.144e-1153.57Photosystem I reaction center subunit IV OS=Synech... [more]
PSAE_TRIEI9.231e-1151.61Photosystem I reaction center subunit IV OS=Tricho... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YI17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259892 ID=DY259892; Name=DY259892; organism=Citrus clementina; type=EST; length=639bp
CTTTTAGTTACTTTCAAGCCTCTCAATCTTAGGCACTGTCCTTTTGCACA
TTTTATTTTCTGCAACTCTCTCCCCAGTTAAACAGATACAGCGAAAGAAA
GAAAGAAAAAGCAATGGCTAGCTGCAACATGGCATCAGCTGCTTCTGGGT
TTTCGCTGACACCCAATGTTGCCACCAATGTAAACTCAGGTTCCAAGAGC
AACATGCTGTTTTTCCCTCCAAAGAACAACAGCTCCAACAGTTTCAGGCT
TGTTGTAAGGGCTTCTGAGGAGGCTGCTGCCCCGCCGGCTGCTGCCACCA
CCGCTGCCCCAGCTGAAGGTGAAGCAGCTCCCAAGCCCAAGCCACCTCCG
ATTGGACCCAAGAGAGGCGCCAAGGTTAAGATTCTCAGGAGGGAGTCCTA
CTGGTACAATGGCATTGGATCTGTGGTTGCTGTTGACCAGGATCCCAAGA
GTCGGTACCCAGTTGTGGTTCGATTCAACAAGGTTAACTATGCAAATGTA
TCGACGAACAACTATGCATTGGATGAGATCGAAGAAGTTAAATGAGTTAT
GTAATTTTGATTTGCATATTATTCCCCGCTCTAGATTAAGCCTTTGTGTG
CCAGGAATGTGTATTCTATTCTCCAAGTGAATTCTTCTT
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