DY259893

Overview
NameDY259893
Unique NameDY259893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length794
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 8.089e-72
Identity = 128/205 (62.44%), Postives = 158/205 (77.07%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQE------SHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            +I +KV +A    EK I V  VF +DEMID +GVTKGKG++GV +RW   +LPRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKK+Y++G G          +   TE+D T+K ITPMGGFPHYG V +D++MIKGCC+G KKR++TLR+SLLK T R ALE+IK+KFIDTSSK GHGRFQT  +K  + G +K
Sbjct:  189 SIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 8.089e-72
Identity = 125/202 (61.88%), Postives = 161/202 (79.70%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGG---QESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            TI +KVD+A    EKQ+ VD VF +DEMID IGVT+G G++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N K+Y++GK     +  + G TEFD T+K ITPMGGFP YGIV  DY+M++G  +GPKKR++TLR+SL+ QT R+A E+I +K+IDTSSK GHGRFQTT EK+ + G++K
Sbjct:  189 TIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.802e-71
Identity = 125/202 (61.88%), Postives = 160/202 (79.21%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGG---QESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            TI +KVD+A    EKQI VD VF +DEMID IGVTKG G++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N K+Y++GK     +  + G TEFD T+K I PMGGFP YG+V  DY+M++G  +GPKKR++TLR+SL+ QT R+A E+I +K+IDTSSK GHGRFQTT EK+ + G++K
Sbjct:  189 TIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 268.47 bits (685), Expect = 3.074e-71
Identity = 128/205 (62.44%), Postives = 164/205 (80.00%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            T+AEK+D+A    E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGA HPARV+F+VARAGQ GYHHRTE+NKK+YK+G+      G    +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  189 TVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 266.544 bits (680), Expect = 1.168e-70
Identity = 125/199 (62.81%), Postives = 158/199 (79.40%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            +I+EKVD+A   FEK + VD+VF+++EMID I VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N K+Y++GKG  E++ G T FDRT+K ITPMGGF HYG +K+D++M+KGC  G +KR+VTLR+SL   TSR ALEE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  187 SISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEAN-GATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 4.438e-70
Identity = 121/199 (60.80%), Postives = 159/199 (79.90%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            ++A+KVD+A   FEK I +D++F+KDEMID+I VTKG G++GV +RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT  N KV+++GKG  E +   T+FD ++K ITPMGGF  YG VK+DY+M+KG   G KKRV+TLR++L  QTSR A E++++K+IDTSSKFGHG FQT +EK+ + G +K
Sbjct:  188 SVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEGNAS-TDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 263.848 bits (673), Expect = 7.571e-70
Identity = 123/205 (60.00%), Postives = 158/205 (77.07%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            T+AEKV +A    EKQ+PV +VF ++E+ID+I VTKG+G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK+Y++G+      G    +   T +D T+K ITP+GGFPHYG V +D++M+KGC  G KKRV+TLR+SLL   SR ALE I++KFIDT+SKFGHGRFQT QEK+ + G  K
Sbjct:  189 TVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.291e-69
Identity = 122/199 (61.31%), Postives = 158/199 (79.40%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            ++++KVD+A   FEK + VD+VF+++EMID++ VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KVY++GKG  E++   TEFDRT+K ITPMGGF HYG + +D++++KG   G +KRVVTLR+SL   TSR ALEE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  187 SVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVVAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKGDDEANAA-TEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.877e-69
Identity = 122/199 (61.31%), Postives = 155/199 (77.89%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            ++++KVD+A   FEK + VD+VF+KDEM+D+  VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N KVY++G  G ES +G TEFDRT+K I PMGGF  YG VK+D++++KG   G KKR+VT+R+SL   TSR A E + +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  187 SVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVAAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSAGDES-SGATEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.757e-69
Identity = 124/199 (62.31%), Postives = 155/199 (77.89%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            +I+EKVD+A   FEK + VD+VF+++EMID I VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y++GKG  E +   T FDRT+K I PMGGF HYG+V +D++M+KG   G KKRVVTLR+SL   TSR A+EE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  187 SISEKVDWAREHFEKTVSVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGKGDDEGNAA-TNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
The following BLAST results are available for this feature:
BLAST of DY259893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_DROME8.089e-7262.4460S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_CAEEL8.089e-7261.8860S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_CAEBR1.802e-7161.8860S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3_MACFA3.074e-7162.4460S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_YEAST1.168e-7062.8160S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3_ASPFU4.438e-7060.8060S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3L_BOVIN7.571e-7060.0060S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_KLULA1.291e-6961.3160S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3_DEBHA2.877e-6961.3160S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_CANGA3.757e-6962.3160S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YI18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259893 ID=DY259893; Name=DY259893; organism=Citrus clementina; type=EST; length=794bp
CACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAAGCAAA
TTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATCGGT
GTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACCCGTTGGGGTGTTAC
CCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAAGGTGGCTTGTATTG
GTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTGCCAGAGCTGGTCAG
AATGGATACCATCATCGTACTGAAATGAACAAGAAGGTTTACAAGCTTGG
CAAGGGTGGACAGGAGTCTCACACTGGCATAACTGAATTTGACAGGACTG
AGAAGGACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTGAAA
GATGATTATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAGGGT
GGTCACGCTTCGTCAGTCGCTTCTCAAACAGACATCTCGTTTAGCTCTTG
AGGAAATCAAAATCAAGTTCATTGATACCTCTTCCAAGTTTGGGCATGGC
CGCTTCCAGACTACACAGGAGAAACAGAAGTACTATGGACGCATGAAAGC
ATAATTATGCTAAAAAGACAAGAGTTTTGCACCGTTATAGTTAATTCAGG
CAGTCTAAATTTTATCCAGTTTGACTATCTTGGAACAGTTTTTGAGCCTG
GCATCAGCTGTGTTTCTTTTTCTTTTTTAATTTATTTTTTAAGAGATGGT
CCTGCTTTATTCTATTGAAAATTTTTAAATTAAAAAAATTTCCT
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