DY259893

Overview
NameDY259893
Unique NameDY259893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length794
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:631..1424. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 260.381 bits (664), Expect = 8.371e-69
Identity = 121/205 (59.02%), Postives = 156/205 (76.10%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQ------ESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            T+AEKV +A    EKQ+PV +VF + E+ID+I VTKG+G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK++++G+G          +   T +D T K ITP+GGFPHYG V +D++M+KGC  G KKRV+TLR+SLL   SR A+E I++KFIDT+SKFGHGRFQT QEK+ + G  K
Sbjct:  189 TVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.209e-67
Identity = 115/199 (57.79%), Postives = 157/199 (78.89%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            ++A+KV++ +G FEK + +D++F+KDE+ID+I VTKG G+ GV  RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+Y++GKG  E  +  TE D T+K ITPMGGF  YG + +D++M+KG   G KKRV+TLR+S+   TSR ALE++++K+IDTSS+FGHG FQT  EK+++ G +K
Sbjct:  188 SVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKGHGFTGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGKGDAED-SAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.745e-66
Identity = 116/199 (58.29%), Postives = 154/199 (77.39%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            ++A+KV++A   FEK + + + F+++EMID+IGVT+GKG EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y++G  G ++    T+FD TEK ITPMGGF  YG+V++D++M+ G   GP KRV+TLR+SLL  TSR ALE + +K+IDT+SKFGHGRFQT  E +++ G +K
Sbjct:  187 SVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.745e-66
Identity = 116/199 (58.29%), Postives = 154/199 (77.39%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            ++A+KV++A   FEK + + + F+++EMID+IGVT+GKG EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y++G  G ++    T+FD TEK ITPMGGF  YG+V++D++M+ G   GP KRV+TLR+SLL  TSR ALE + +K+IDT+SKFGHGRFQT  E +++ G +K
Sbjct:  187 SVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.753e-64
Identity = 119/200 (59.50%), Postives = 154/200 (77.00%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA 601
            +I+EKV++A G  EK+I +  VF  +E ID IGVTKGKG++G V R+GV + PRK+ +G+RKVACIGAWHP+RV +++ARAGQ G+H RTE NK+VY +G G        TEFD TEK I+PMGGFPHYG V++D++M+KG  VG +KRVVTLR+SLL+Q    A EE+ IKF+DTSSK GHGRFQT+ EK+ +YG  KA
Sbjct:  183 SISEKVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMIGNGSSNIK---TEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARKA 376          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_PIG (60S ribosomal protein L3 (Fragment) OS=Sus scrofa GN=RPL3 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.295e-42
Identity = 78/130 (60.00%), Postives = 102/130 (78.46%), Query Frame = 2
Query:   47 QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMI 418
            ++PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPAR +F+VARAGQ GYHHRTE+NKK+YK+G+      G    +   T++D ++K I P+G F HYG V +D++M+
Sbjct:    1 RVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEVTNDFVML 130          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_THESM (50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.430e-38
Identity = 80/179 (44.69%), Postives = 112/179 (62.57%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 538
            +I EK +Y      K+I V  + Q+ E++DI+ VTKGKG +G V RWGV     K  +G RKVA IG WHPARV +TV RAGQ G+HHRTE NK++ ++G+ G+ +  G       + +ITP GGFPHYG+VK+D++MI G   G  KR++ +R ++     R   E  +I +I   SK
Sbjct:  186 SIEEKFNYIKEKLGKEIRVGEILQEGELLDIVAVTKGKGTQGPVKRWGVKLTSHKDSKGRRKVATIGPWHPARVMWTVPRAGQMGFHHRTEFNKRLLRIGENGKLTLNG------EKIEITPNGGFPHYGVVKNDFIMIAGTIPGAIKRIIRMRPAVRPPAKRPPAEAPQITYISRESK 358          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_PYRFU (50S ribosomal protein L3P OS=Pyrococcus furiosus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 73/179 (40.78%), Postives = 111/179 (62.01%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 538
            ++ EK +Y      K++ V  V ++ E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+ G+     +   + TE +ITP GGFPHYGIV+ D++MI G   G  KR++ +R ++     +  ++  +I ++   SK
Sbjct:  191 SVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK-----LKLDENTEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 364          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_PYRHO (50S ribosomal protein L3P OS=Pyrococcus horikoshii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.476e-36
Identity = 74/179 (41.34%), Postives = 109/179 (60.89%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 538
            ++ EK +Y      K+I V  V ++ E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+ G+         D  E +ITP GGFPHYGIV+ D++MI G   G  KR++ +R ++     +  ++  +I ++   SK
Sbjct:  189 SVEEKFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK------LVIDGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 361          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.152e-36
Identity = 73/179 (40.78%), Postives = 109/179 (60.89%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 538
            ++ EK +Y      K++ V  V ++ E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+ G+         D  E +ITP GGFPHYGIV+ D++MI G   G  KR++ +R ++     +  ++  +I ++   SK
Sbjct:  188 SVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK------LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 360          
The following BLAST results are available for this feature:
BLAST of DY259893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3L_HUMAN8.371e-6959.0260S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3_NEUCR1.209e-6757.7960S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]
RL3B_SCHPO1.745e-6658.2960S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]
RL3A_SCHPO1.745e-6658.2960S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_ENCCU4.753e-6459.5060S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_PIG2.295e-4260.0060S ribosomal protein L3 (Fragment) OS=Sus scrofa ... [more]
RL3_THESM3.430e-3844.6950S ribosomal protein L3P OS=Thermococcus sibiricu... [more]
RL3_PYRFU4.193e-3640.7850S ribosomal protein L3P OS=Pyrococcus furiosus G... [more]
RL3_PYRHO5.476e-3641.3450S ribosomal protein L3P OS=Pyrococcus horikoshii... [more]
RL3_PYRAB7.152e-3640.7850S ribosomal protein L3P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YI18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259893 ID=DY259893; Name=DY259893; organism=Citrus clementina; type=EST; length=794bp
CACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAAGCAAA
TTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATCGGT
GTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACCCGTTGGGGTGTTAC
CCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAAGGTGGCTTGTATTG
GTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTGCCAGAGCTGGTCAG
AATGGATACCATCATCGTACTGAAATGAACAAGAAGGTTTACAAGCTTGG
CAAGGGTGGACAGGAGTCTCACACTGGCATAACTGAATTTGACAGGACTG
AGAAGGACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTGAAA
GATGATTATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAGGGT
GGTCACGCTTCGTCAGTCGCTTCTCAAACAGACATCTCGTTTAGCTCTTG
AGGAAATCAAAATCAAGTTCATTGATACCTCTTCCAAGTTTGGGCATGGC
CGCTTCCAGACTACACAGGAGAAACAGAAGTACTATGGACGCATGAAAGC
ATAATTATGCTAAAAAGACAAGAGTTTTGCACCGTTATAGTTAATTCAGG
CAGTCTAAATTTTATCCAGTTTGACTATCTTGGAACAGTTTTTGAGCCTG
GCATCAGCTGTGTTTCTTTTTCTTTTTTAATTTATTTTTTAAGAGATGGT
CCTGCTTTATTCTATTGAAAATTTTTAAATTAAAAAAATTTCCT
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