DY259893

Overview
NameDY259893
Unique NameDY259893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length794
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:631..1424. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.401e-33
Identity = 73/180 (40.56%), Postives = 105/180 (58.33%), Query Frame = 2
Query:    5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 538
            +  K DYA     K++    V  + E++D+I VTKGKG +G V RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  +G+ G+         D  E +ITP GGFPHYGIV+ D+LMI+G   G  KR++ +R ++     +  +E  +I ++   SK
Sbjct:  172 VKAKFDYAKEKIGKELRAGEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK------LVLDGNEIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.666e-33
Identity = 73/180 (40.56%), Postives = 105/180 (58.33%), Query Frame = 2
Query:    5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 538
            +  K +YA     K+I    V  + E++D+I VTKGKG +G V RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  +G+ G+    G       E DITP GGFPHYGI++ D+LMI+G   G  KR++ +R ++     +  +E  +I ++   SK
Sbjct:  172 VKAKFEYAKERIGKEIRASEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGKLVLNG------NEIDITPKGGFPHYGIIRSDFLMIEGSVPGSFKRIIRVRPAIKPPKKKPPVERPQITYVSRESK 345          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.666e-33
Identity = 74/182 (40.66%), Postives = 110/182 (60.44%), Query Frame = 2
Query:    5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 544
            I E+++YA     KQ+ +  VFQ+ E++D IGVTKGKG++G V RWGV  +  +   +G+ R V  IG W P  V ++V   GQ GYH RTE NK++ K+G  G E              ITP GGF HYG+++++Y+++KG   GP KR++ LR+++  Q   + + E  I +I T+SK G
Sbjct:  169 IEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPE--ITYISTTSKQG 334          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.153e-32
Identity = 71/180 (39.44%), Postives = 106/180 (58.89%), Query Frame = 2
Query:    5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 538
            +  K DYA     K++    V  + E++D+I VTKGKG +G V RWG+     K  R    R V  +G WHP RV +TV +AGQ G+HHRTE NK++  +G+ G+     +   ++ E +ITP GGFPHYGI++ D+LMI+G   G  KR++ +R ++     +  +E  +I +I   SK
Sbjct:  172 VKAKFDYAKEKIGKELRASEVLHEGELLDVIAVTKGKGTQGPVKRWGIKIQFHKAQRAGKGRHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK-----LKLDEKNEIEITPKGGFPHYGIIRSDFLMIQGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYISRESK 346          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.823e-31
Identity = 70/182 (38.46%), Postives = 107/182 (58.79%), Query Frame = 2
Query:    5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 544
            + E +DYA     K+I V  VF +  +ID+I VTKGKG++G V RWGV  L  K  R    R+V  +G W+P  V +TV +AGQ G+H RTE NK++ K+G+ G+E              ITP GGF HYG+++  Y+++ G   GP KR++ +R ++  +  +   + + I ++ T+SK G
Sbjct:  165 VEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTTSKQG 330          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.016e-30
Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = 2
Query:    5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 472
            + E+ +YA     ++I    VF + E++D+  +TKGKG++GVV RWGVT   RKT R    R +  IG   P+RV +TV  AGQ GYH RTE NK++ K+G+ G+E              +TP GGF +YG+V+ DY+MI G   GPKKR++ +R ++
Sbjct:  175 VRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.438e-30
Identity = 74/184 (40.22%), Postives = 105/184 (57.07%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 547
            ++AEK+ YA     K + ++ VF+  E ID + VTKGKG++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR ++     +  L E  + +I   SK G+
Sbjct:  167 SVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPE--VTYISKESKQGN 334          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.438e-30
Identity = 74/184 (40.22%), Postives = 105/184 (57.07%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 547
            ++AEK+ YA     K + ++ VF+  E ID + VTKGKG++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR ++     +  L E  + +I   SK G+
Sbjct:  167 SVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPE--VTYISKESKQGN 334          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.864e-30
Identity = 73/184 (39.67%), Postives = 104/184 (56.52%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 547
            ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  I +I T SK G+
Sbjct:  167 SVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--IAYISTESKQGN 334          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.659e-30
Identity = 72/184 (39.13%), Postives = 104/184 (56.52%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 547
            ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  + +I T SK G+
Sbjct:  167 SVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334          
The following BLAST results are available for this feature:
BLAST of DY259893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_PYRKO7.401e-3340.5650S ribosomal protein L3P OS=Pyrococcus kodakaraen... [more]
RL3_THEGJ9.666e-3340.5650S ribosomal protein L3P OS=Thermococcus gammatol... [more]
RL3_METJA9.666e-3340.6650S ribosomal protein L3P OS=Methanocaldococcus ja... [more]
RL3_THEON2.153e-3239.4450S ribosomal protein L3P OS=Thermococcus onnurine... [more]
RL3_ARCFU1.823e-3138.4650S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]
RL3_METKA2.016e-3042.4150S ribosomal protein L3P OS=Methanopyrus kandleri... [more]
RL3_METVS3.438e-3040.2250S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METVA3.438e-3040.2250S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METMP5.864e-3039.6750S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM77.659e-3039.1350S ribosomal protein L3P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YI18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259893 ID=DY259893; Name=DY259893; organism=Citrus clementina; type=EST; length=794bp
CACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAAGCAAA
TTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATCGGT
GTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACCCGTTGGGGTGTTAC
CCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAAGGTGGCTTGTATTG
GTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTGCCAGAGCTGGTCAG
AATGGATACCATCATCGTACTGAAATGAACAAGAAGGTTTACAAGCTTGG
CAAGGGTGGACAGGAGTCTCACACTGGCATAACTGAATTTGACAGGACTG
AGAAGGACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTGAAA
GATGATTATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAGGGT
GGTCACGCTTCGTCAGTCGCTTCTCAAACAGACATCTCGTTTAGCTCTTG
AGGAAATCAAAATCAAGTTCATTGATACCTCTTCCAAGTTTGGGCATGGC
CGCTTCCAGACTACACAGGAGAAACAGAAGTACTATGGACGCATGAAAGC
ATAATTATGCTAAAAAGACAAGAGTTTTGCACCGTTATAGTTAATTCAGG
CAGTCTAAATTTTATCCAGTTTGACTATCTTGGAACAGTTTTTGAGCCTG
GCATCAGCTGTGTTTCTTTTTCTTTTTTAATTTATTTTTTAAGAGATGGT
CCTGCTTTATTCTATTGAAAATTTTTAAATTAAAAAAATTTCCT
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