DY259893
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 7.401e-33 Identity = 73/180 (40.56%), Postives = 105/180 (58.33%), Query Frame = 2 Query: 5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 538 + K DYA K++ V + E++D+I VTKGKG +G V RWGV K R R + +G WHPARV +TV +AGQ G+HHRTE NK++ +G+ G+ D E +ITP GGFPHYGIV+ D+LMI+G G KR++ +R ++ + +E +I ++ SK Sbjct: 172 VKAKFDYAKEKIGKELRAGEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK------LVLDGNEIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.666e-33 Identity = 73/180 (40.56%), Postives = 105/180 (58.33%), Query Frame = 2 Query: 5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 538 + K +YA K+I V + E++D+I VTKGKG +G V RWGV K R R + +G WHPARV +TV +AGQ G+HHRTE NK++ +G+ G+ G E DITP GGFPHYGI++ D+LMI+G G KR++ +R ++ + +E +I ++ SK Sbjct: 172 VKAKFEYAKERIGKEIRASEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGKLVLNG------NEIDITPKGGFPHYGIIRSDFLMIEGSVPGSFKRIIRVRPAIKPPKKKPPVERPQITYVSRESK 345
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.666e-33 Identity = 74/182 (40.66%), Postives = 110/182 (60.44%), Query Frame = 2 Query: 5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 544 I E+++YA KQ+ + VFQ+ E++D IGVTKGKG++G V RWGV + + +G+ R V IG W P V ++V GQ GYH RTE NK++ K+G G E ITP GGF HYG+++++Y+++KG GP KR++ LR+++ Q + + E I +I T+SK G Sbjct: 169 IEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPE--ITYISTTSKQG 334
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.153e-32 Identity = 71/180 (39.44%), Postives = 106/180 (58.89%), Query Frame = 2 Query: 5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 538 + K DYA K++ V + E++D+I VTKGKG +G V RWG+ K R R V +G WHP RV +TV +AGQ G+HHRTE NK++ +G+ G+ + ++ E +ITP GGFPHYGI++ D+LMI+G G KR++ +R ++ + +E +I +I SK Sbjct: 172 VKAKFDYAKEKIGKELRASEVLHEGELLDVIAVTKGKGTQGPVKRWGIKIQFHKAQRAGKGRHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK-----LKLDEKNEIEITPKGGFPHYGIIRSDFLMIQGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYISRESK 346
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.823e-31 Identity = 70/182 (38.46%), Postives = 107/182 (58.79%), Query Frame = 2 Query: 5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 544 + E +DYA K+I V VF + +ID+I VTKGKG++G V RWGV L K R R+V +G W+P V +TV +AGQ G+H RTE NK++ K+G+ G+E ITP GGF HYG+++ Y+++ G GP KR++ +R ++ + + + + I ++ T+SK G Sbjct: 165 VEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTTSKQG 330
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 2.016e-30 Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = 2 Query: 5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 472 + E+ +YA ++I VF + E++D+ +TKGKG++GVV RWGVT RKT R R + IG P+RV +TV AGQ GYH RTE NK++ K+G+ G+E +TP GGF +YG+V+ DY+MI G GPKKR++ +R ++ Sbjct: 175 VRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.438e-30 Identity = 74/184 (40.22%), Postives = 105/184 (57.07%), Query Frame = 2 Query: 2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 547 ++AEK+ YA K + ++ VF+ E ID + VTKGKG++G V RWGV + + +G+ R+ IG W P RV +TV AGQ G+H RTE NK++ KLG G E ITP GGF +YG VK+ Y+++KG GP KR+V LR ++ + L E + +I SK G+ Sbjct: 167 SVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPE--VTYISKESKQGN 334
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.438e-30 Identity = 74/184 (40.22%), Postives = 105/184 (57.07%), Query Frame = 2 Query: 2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 547 ++AEK+ YA K + ++ VF+ E ID + VTKGKG++G V RWGV + + +G+ R+ IG W P RV +TV AGQ G+H RTE NK++ KLG G E ITP GGF +YG VK+ Y+++KG GP KR+V LR ++ + L E + +I SK G+ Sbjct: 167 SVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPE--VTYISKESKQGN 334
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 5.864e-30 Identity = 73/184 (39.67%), Postives = 104/184 (56.52%), Query Frame = 2 Query: 2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 547 ++AE++ YA K + + VF+ E+ID + +TKGKG++G V RWG+ + + +G+ R IG W P RV +TV GQ G+H RTE NK++ KLG G E ITP GGF +YG VK+ Y+++KG GP KR+V LR S+ + L E I +I T SK G+ Sbjct: 167 SVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--IAYISTESKQGN 334
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 7.659e-30 Identity = 72/184 (39.13%), Postives = 104/184 (56.52%), Query Frame = 2 Query: 2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 547 ++AE++ YA K + + VF+ E+ID + +TKGKG++G V RWG+ + + +G+ R IG W P RV +TV GQ G+H RTE NK++ KLG G E ITP GGF +YG VK+ Y+++KG GP KR+V LR S+ + L E + +I T SK G+ Sbjct: 167 SVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334 The following BLAST results are available for this feature:
BLAST of DY259893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >DY259893 ID=DY259893; Name=DY259893; organism=Citrus clementina; type=EST; length=794bpback to top |