DY259893

Overview
NameDY259893
Unique NameDY259893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length794
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:631..1424. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.659e-30
Identity = 72/184 (39.13%), Postives = 104/184 (56.52%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 547
            ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  + +I T SK G+
Sbjct:  167 SVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.000e-29
Identity = 71/183 (38.80%), Postives = 104/183 (56.83%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 544
            ++ E++  A G    Q+ V  +F   E ID+  VTKGKG +G V RWG+    RK  R   LR V  +G WHPAR+S+ V + GQ GYH RTE NK++  +G  G               DITP GGF  YG+V+++Y++IKG   GP KR+V +R++ ++  +  A +  +I ++   SK G
Sbjct:  167 SVEEQLKAAEGLLGSQVAVSNIFNVGEWIDVSAVTKGKGTQGPVKRWGIMLQKRKHSRTGKLRHVGNLGPWHPARISWRVPQLGQTGYHQRTEFNKRIMAIGTNG--------------TDITPDGGFVGYGVVRNEYMLIKGSVPGPVKRLVRMRRA-IRPGAAFAPKAPQILYVSKESKQG 334          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.000e-29
Identity = 72/184 (39.13%), Postives = 104/184 (56.52%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 547
            ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  + +I T SK G+
Sbjct:  167 SVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.306e-29
Identity = 67/183 (36.61%), Postives = 107/183 (58.47%), Query Frame = 2
Query:    5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 547
            I++ + YA     K++ ++ VF   E ID + +TKGKG++G V RWG+  +  +  ++G+ R    IG W P R+ +TV  AGQ G+H RTE NK++ K+G+ G E              I P GGF +YG+VK++Y+++KG   GP KR+V LR+++     +  L E  + ++ T SK G+
Sbjct:  167 ISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKRWGIKIQFGKHQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE--------------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPE--LTYVSTESKQGN 333          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.468e-29
Identity = 72/184 (39.13%), Postives = 103/184 (55.98%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 544
            T  EK +YA     K +    +F +   +D I VTKGKG++G V RWG+     K  R    R +  +G W P+R  +TV +AGQ GYH RTE NK++ K+G             D +E D + P GGF  YG+V++DY+MIKG   GP KR+V LR+++  + +    E  +I +I T+SK G
Sbjct:  168 TPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWGIRIQYGKAARSSKGRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIG-------------DASEADLVNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASKQG 336          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.444e-28
Identity = 67/156 (42.95%), Postives = 94/156 (60.26%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 463
            ++ E++++A     K +    VF   +++D+I VTKGKGY+GV+ R+GVT LPR  K  +G R+   IG   PA V FT  R GQ G+H RTE NK++ K+G+ G E              ITP  GFPHYG+VK  Y++I+G   G +KR+V LR
Sbjct:  173 SVDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.218e-28
Identity = 64/182 (35.16%), Postives = 103/182 (56.59%), Query Frame = 2
Query:    5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 544
            +A++ ++A     K + +  VF   E++D+  +TKG G +G V RWG+    RK  R  +K  V  +G W+P R+ + V + GQ GYH RTE NK++ K+G   +E              ITP GGF HYG++++DY+M+KG   GP KR+V +R ++  +   +  +  +I ++ T SK G
Sbjct:  172 MAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDKAEE--------------ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAV--RPKNMPKQAPEITYLSTQSKMG 337          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.203e-28
Identity = 66/156 (42.31%), Postives = 93/156 (59.62%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 463
            +I E++++A     K +    VF   +++D+I VTKGKGY+GVV R+GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE NK++ K+G  G E              ITP  GFPHYG++K  Y++++G   G +KR+V LR
Sbjct:  173 SIDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVVKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRILKIGDNGAE--------------ITPKSGFPHYGVIKGPYILLQGSVPGARKRLVVLR 313          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.363e-28
Identity = 75/184 (40.76%), Postives = 101/184 (54.89%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 544
            ++ +K++YA     K+I    VFQ+ E  D I  TKGKG +G V R+GV     K  R    R V  IG W P R  +TVA  GQ GYH RTE NKK+ K+G             D +E D I P GGF  YG VK++Y+++KG   GP KR+V LR+ +   + ++   E  I +I T+SK G
Sbjct:  168 SVEDKLEYAISILGKEITPQDVFQEGEYTDAIATTKGKGVQGPVKRFGVRIQYGKAARSGIERHVGSIGPWTPNRTMWTVAMQGQMGYHKRTEYNKKLLKIG-------------DESEVDLINPDGGFVKYGFVKNNYILVKGSLPGPSKRLVVLRKGVRNASKQVTAPE--ISYISTTSKQG 336          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.597e-27
Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 2
Query:    5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 463
            I E++ +A     K +    VF   +++D+I VTKGKG++GVV R+GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE NK++ K+G+ G E              ITP  GFPHYG++K  Y++I+G   G +KR+V LR
Sbjct:  174 IDERIKFAISLLGKTVSPKDVFSPGQLVDVIAVTKGKGWQGVVKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVIKGPYILIQGSLPGARKRLVVLR 313          
The following BLAST results are available for this feature:
BLAST of DY259893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_METM67.659e-3039.1350S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METTP1.000e-2938.8050S ribosomal protein L3P OS=Methanosaeta thermoph... [more]
RL3_METM51.000e-2939.1350S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_META31.306e-2936.6150S ribosomal protein L3P OS=Methanococcus aeolicu... [more]
RL3_METTH8.468e-2939.1350S ribosomal protein L3P OS=Methanobacterium ther... [more]
RL3_PYRAE1.444e-2842.9550S ribosomal protein L3P OS=Pyrobaculum aerophilu... [more]
RL3_UNCMA3.218e-2835.1650S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_PYRCJ4.203e-2842.3150S ribosomal protein L3P OS=Pyrobaculum calidifon... [more]
RL3_METST9.363e-2840.7650S ribosomal protein L3P OS=Methanosphaera stadtm... [more]
RL3_PYRAR1.597e-2742.5850S ribosomal protein L3P OS=Pyrobaculum arsenatic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YI18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259893 ID=DY259893; Name=DY259893; organism=Citrus clementina; type=EST; length=794bp
CACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAAGCAAA
TTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATCGGT
GTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACCCGTTGGGGTGTTAC
CCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAAGGTGGCTTGTATTG
GTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTGCCAGAGCTGGTCAG
AATGGATACCATCATCGTACTGAAATGAACAAGAAGGTTTACAAGCTTGG
CAAGGGTGGACAGGAGTCTCACACTGGCATAACTGAATTTGACAGGACTG
AGAAGGACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTGAAA
GATGATTATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAGGGT
GGTCACGCTTCGTCAGTCGCTTCTCAAACAGACATCTCGTTTAGCTCTTG
AGGAAATCAAAATCAAGTTCATTGATACCTCTTCCAAGTTTGGGCATGGC
CGCTTCCAGACTACACAGGAGAAACAGAAGTACTATGGACGCATGAAAGC
ATAATTATGCTAAAAAGACAAGAGTTTTGCACCGTTATAGTTAATTCAGG
CAGTCTAAATTTTATCCAGTTTGACTATCTTGGAACAGTTTTTGAGCCTG
GCATCAGCTGTGTTTCTTTTTCTTTTTTAATTTATTTTTTAAGAGATGGT
CCTGCTTTATTCTATTGAAAATTTTTAAATTAAAAAAATTTCCT
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