DY259893
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 7.659e-30 Identity = 72/184 (39.13%), Postives = 104/184 (56.52%), Query Frame = 2 Query: 2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 547 ++AE++ YA K + + VF+ E+ID + +TKGKG++G V RWG+ + + +G+ R IG W P RV +TV GQ G+H RTE NK++ KLG G E ITP GGF +YG VK+ Y+++KG GP KR+V LR S+ + L E + +I T SK G+ Sbjct: 167 SVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.000e-29 Identity = 71/183 (38.80%), Postives = 104/183 (56.83%), Query Frame = 2 Query: 2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 544 ++ E++ A G Q+ V +F E ID+ VTKGKG +G V RWG+ RK R LR V +G WHPAR+S+ V + GQ GYH RTE NK++ +G G DITP GGF YG+V+++Y++IKG GP KR+V +R++ ++ + A + +I ++ SK G Sbjct: 167 SVEEQLKAAEGLLGSQVAVSNIFNVGEWIDVSAVTKGKGTQGPVKRWGIMLQKRKHSRTGKLRHVGNLGPWHPARISWRVPQLGQTGYHQRTEFNKRIMAIGTNG--------------TDITPDGGFVGYGVVRNEYMLIKGSVPGPVKRLVRMRRA-IRPGAAFAPKAPQILYVSKESKQG 334
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.000e-29 Identity = 72/184 (39.13%), Postives = 104/184 (56.52%), Query Frame = 2 Query: 2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 547 ++AE++ YA K + + VF+ E+ID + +TKGKG++G V RWG+ + + +G+ R IG W P RV +TV GQ G+H RTE NK++ KLG G E ITP GGF +YG VK+ Y+++KG GP KR+V LR S+ + L E + +I T SK G+ Sbjct: 167 SVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.306e-29 Identity = 67/183 (36.61%), Postives = 107/183 (58.47%), Query Frame = 2 Query: 5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT-RLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 547 I++ + YA K++ ++ VF E ID + +TKGKG++G V RWG+ + + ++G+ R IG W P R+ +TV AGQ G+H RTE NK++ K+G+ G E I P GGF +YG+VK++Y+++KG GP KR+V LR+++ + L E + ++ T SK G+ Sbjct: 167 ISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKRWGIKIQFGKHQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE--------------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPE--LTYVSTESKQGN 333
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 8.468e-29 Identity = 72/184 (39.13%), Postives = 103/184 (55.98%), Query Frame = 2 Query: 2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 544 T EK +YA K + +F + +D I VTKGKG++G V RWG+ K R R + +G W P+R +TV +AGQ GYH RTE NK++ K+G D +E D + P GGF YG+V++DY+MIKG GP KR+V LR+++ + + E +I +I T+SK G Sbjct: 168 TPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWGIRIQYGKAARSSKGRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIG-------------DASEADLVNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASKQG 336
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.444e-28 Identity = 67/156 (42.95%), Postives = 94/156 (60.26%), Query Frame = 2 Query: 2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 463 ++ E++++A K + VF +++D+I VTKGKGY+GV+ R+GVT LPR K +G R+ IG PA V FT R GQ G+H RTE NK++ K+G+ G E ITP GFPHYG+VK Y++I+G G +KR+V LR Sbjct: 173 SVDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.218e-28 Identity = 64/182 (35.16%), Postives = 103/182 (56.59%), Query Frame = 2 Query: 5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 544 +A++ ++A K + + VF E++D+ +TKG G +G V RWG+ RK R +K V +G W+P R+ + V + GQ GYH RTE NK++ K+G +E ITP GGF HYG++++DY+M+KG GP KR+V +R ++ + + + +I ++ T SK G Sbjct: 172 MAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDKAEE--------------ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAV--RPKNMPKQAPEITYLSTQSKMG 337
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.203e-28 Identity = 66/156 (42.31%), Postives = 93/156 (59.62%), Query Frame = 2 Query: 2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 463 +I E++++A K + VF +++D+I VTKGKGY+GVV R+GVT LPR K +G R+ IG PA + FT R GQ G+H RTE NK++ K+G G E ITP GFPHYG++K Y++++G G +KR+V LR Sbjct: 173 SIDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVVKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRILKIGDNGAE--------------ITPKSGFPHYGVIKGPYILLQGSVPGARKRLVVLR 313
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 9.363e-28 Identity = 75/184 (40.76%), Postives = 101/184 (54.89%), Query Frame = 2 Query: 2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 544 ++ +K++YA K+I VFQ+ E D I TKGKG +G V R+GV K R R V IG W P R +TVA GQ GYH RTE NKK+ K+G D +E D I P GGF YG VK++Y+++KG GP KR+V LR+ + + ++ E I +I T+SK G Sbjct: 168 SVEDKLEYAISILGKEITPQDVFQEGEYTDAIATTKGKGVQGPVKRFGVRIQYGKAARSGIERHVGSIGPWTPNRTMWTVAMQGQMGYHKRTEYNKKLLKIG-------------DESEVDLINPDGGFVKYGFVKNNYILVKGSLPGPSKRLVVLRKGVRNASKQVTAPE--ISYISTTSKQG 336
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.597e-27 Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 2 Query: 5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 463 I E++ +A K + VF +++D+I VTKGKG++GVV R+GVT LPR K +G R+ IG PA + FT R GQ G+H RTE NK++ K+G+ G E ITP GFPHYG++K Y++I+G G +KR+V LR Sbjct: 174 IDERIKFAISLLGKTVSPKDVFSPGQLVDVIAVTKGKGWQGVVKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVIKGPYILIQGSLPGARKRLVVLR 313 The following BLAST results are available for this feature:
BLAST of DY259893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >DY259893 ID=DY259893; Name=DY259893; organism=Citrus clementina; type=EST; length=794bpback to top |