DY259895

Overview
NameDY259895
Unique NameDY259895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1009
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259895 vs. ExPASy Swiss-Prot
Match: 4CLL5_ARATH (4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.353e-18
Identity = 67/222 (30.18%), Postives = 104/222 (46.85%), Query Frame = 3
Query:  162 IDPNSGFCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSISEISHQLHLSKPSIAFATSRTSHKL---PPNFRTVLVDSPEFLSLLSTQHQKRRRDFSPSRRKPVRRCSH----SLLFPDHWESQRRAVDSPKHNLLGSV 806
            ++  SGFC+   TF+S R  IPLPP+   L VT F  S  H+          ++A+TG+ LT+ E  R   S+   L +   + K  V  +LSP+S   PV+  S++SLG +++  NPL + +EI+ Q+  S P +AF TS+   K+         VL+D     S+   +         PS  +   R       +LL+        + V S   NL+  V
Sbjct:    4 VNSRSGFCNSNSTFYSKRTPIPLPPNPS-LDVTTFISSQAHRGRIA-----FIDASTGQNLTFTELWRAVESVADCLSE-IGIRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNTSNEIAKQIKDSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLVEMMKKEPSGNRVKERVDQDDTATLLYSSGTTGMSKGVISSHRNLIAMV 218          
BLAST of DY259895 vs. ExPASy Swiss-Prot
Match: 4CLL6_ARATH (4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 1.156e-16
Identity = 43/176 (24.43%), Postives = 82/176 (46.59%), Query Frame = 3
Query:  165 DPNSGFCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSISEISHQLHLSKPSIAFATSRTSHKLPP------------NFRTVLVDSPEFLSLL 656
            +P   F S+T  + S  P + LP      +V+       HK    TA   L+++ TG  +++ E      S+   +     + + DV  ++ P+S   P+++ SL+SLG +V+  NP  S+ EI  Q+      +AF ++    KL              +F ++ +++P+F S++
Sbjct:   20 NPPFWFSSKTGIYTSKFPSLHLPVDPNLDAVSAL---FSHKHHGDTA---LIDSLTGFSISHTELQIMVQSMAAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEIKKQVSECSVGLAFTSTENVEKLSSLGVSVISVSESYDFDSIRIENPKFYSIM 189          

HSP 2 Score: 46.9802 bits (110), Expect = 1.156e-16
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 1
Query:  691 PPAVVNQSDAAVILYSSRTTGKVKGVLLTHPNIISLVASFPHVEYGANPTEQP 849
            P  ++ Q D A I+YSS TTG  KGVLLTH N+I+ +  F  V + A+  E P
Sbjct:  197 PKPLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELF--VRFEASQYEYP 247          
BLAST of DY259895 vs. ExPASy Swiss-Prot
Match: 4CLL8_ORYSJ (Putative 4-coumarate--CoA ligase-like 8 OS=Oryza sativa subsp. japonica GN=4CLL8 PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.535e-16
Identity = 48/156 (30.77%), Postives = 78/156 (50.00%), Query Frame = 3
Query:  174 SGFCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSISEISHQLHLSKPSIAFATSRTSHKL---PPNFRTVLVD 632
            +G+C+ T  + S  P  P   ++  LS  ++ L  +       A P  ++A+TG  L++   LR  +           L +  VA +LSP+S   P L  ++LSLG V+S ANPL +  E++ Q   +KP +A  T   + KL    P+ + VLV+
Sbjct:    9 AGYCAATGVYRSGHP--PQFAAAAALSFPEYILPHMLLPGRR-ARPAFVDASTGAALSFAG-LRALSLRVARALAAAGLRRGRVALLLSPNSLHFPALSLAVLSLGAVLSAANPLLTPDELARQADDAKPFLALVTGELAPKLRSIAPDVKLVLVE 160          

HSP 2 Score: 44.2838 bits (103), Expect = 2.535e-16
Identity = 22/54 (40.74%), Postives = 31/54 (57.41%), Query Frame = 1
Query:  691 PPAVVNQSDAAVILYSSRTTGKVKGVLLTHPNIISLVASFPHVEYGANPTEQPP 852
            P A + + DAA++ YSS TTG+ KGV+ TH N I++ AS      G     + P
Sbjct:  179 PAANIGRDDAALLFYSSGTTGRSKGVVSTHGNAIAMAASLERAWGGGGGGGEKP 232          
BLAST of DY259895 vs. ExPASy Swiss-Prot
Match: 4CLL3_ORYSJ (4-coumarate--CoA ligase-like 3 OS=Oryza sativa subsp. japonica GN=4CLL3 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.537e-16
Identity = 42/160 (26.25%), Postives = 73/160 (45.62%), Query Frame = 3
Query:  168 PNSGFCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSISEISHQLHLSKPSIAFATSRTSHKLPPNFRTVLVDSPEFL 647
            P   + + T  + S+ P + LP      S+T               AP L++AAT   ++  +  R   SL   L++ + + K  V  +L P+S   PV + ++L+ G V +  NP  S +EI+ Q   +   +  A+   + +LPP    V++  PE L
Sbjct:   24 PPPFYSAATGIYSSIHPPVALPTDP---SLTLVAHLFARLPLADPGAPTLVDAATASAVSRADLRRLVASLAAGLRRRHGVRKGSVVLLLLPNSVAFPVSFLAVLAAGAVATTMNPSSSPAEIAAQARATGACLVLASRDGAARLPPLAAPVVL-VPEIL 179          

HSP 2 Score: 45.8246 bits (107), Expect = 2.537e-16
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 1
Query:  700 VVNQSDAAVILYSSRTTGKVKGVLLTHPNIISLVASFPHVE 822
            VV Q DA  ILYSS T+G+ KGV+LTH N+I++   F   E
Sbjct:  216 VVGQDDAVAILYSSGTSGRSKGVVLTHRNLIAMTELFVRFE 256          
The following BLAST results are available for this feature:
BLAST of DY259895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
4CLL5_ARATH3.353e-1830.184-coumarate--CoA ligase-like 5 OS=Arabidopsis thal... [more]
4CLL6_ARATH1.156e-1624.434-coumarate--CoA ligase-like 6 OS=Arabidopsis thal... [more]
4CLL8_ORYSJ2.535e-1630.77Putative 4-coumarate--CoA ligase-like 8 OS=Oryza s... [more]
4CLL3_ORYSJ2.537e-1626.254-coumarate--CoA ligase-like 3 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YI20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259895 ID=DY259895; Name=DY259895; organism=Citrus clementina; type=EST; length=1009bp
CAATAATCGATACCATGCATGAAAAGAAAAAATCTGTAGCAGCCGTCGCA
GGTTCATGATCACCGTTTAATCATCATCCTTTGACTTAAAATCTTCTCTG
CTATTGTCTCTCAGTTCGATTTGAATCTCAATTTATGGCGGGGACAAACA
GCAACGGTCTGATTGATCCAAACAGCGGCTTTTGTTCACAGACGAAAACA
TTCCACAGCGTAAGACCAAAGATTCCTCTGCCGCCATCGTCTCAGCCTCT
CTCCGTCACACAATTCACTTTATCGATCCTCCACAAATCAGCCACCACGA
CCGCCGCACCATTTCTGATGAACGCCGCCACCGGTCGACGCCTCACTTAC
CCTGAGTTCCTCCGCCAAACCAACTCCCTCACGCTCTCCCTCCAAAAGCA
TTACTCTCTCTCCAAGAACGACGTCGCCTTCATCCTCTCCCCTTCCTCTT
TCGAGATCCCCGTCCTCTACTTCTCCCTTCTCTCCCTCGGCGTGGTCGTC
TCTCCCGCCAACCCGCTGGGGTCCATCTCAGAAATATCTCATCAACTCCA
CCTGAGCAAACCTTCAATCGCCTTCGCCACGTCACGCACCTCCCACAAGC
TCCCGCCAAACTTCCGCACAGTCCTCGTCGACTCCCCGGAGTTCCTCTCG
CTGTTATCAACTCAACACCAAAAACGACGTCGTGATTTCTCCCCCAGCCG
TCGTAAACCAGTCAGACGCTGCAGTCATTCTTTACTCTTCCCGGACCACT
GGGAAAGTCAAAGGCGTGCTGTTGACTCACCCAAACATAATCTCCTTGGT
AGCGTCGTTCCCCCATGTCGAGTACGGGGCAAATCCAACTGAACAACCAC
CGCCCGTCGGGTGAAGGTTTCTTTAATAACCCTGCCCTCTGTTTTCCCTT
TTTTGGCCTTCCCAACCGTTAGTGGAAGGTGGGTTGCTGGCCAGTGAAAA
CTGCCGGCCTTCAGGGAAAAAAATTTAATTTTGAAAAAGAAATGTTAAAA
AACCGTGGA
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