DY259902

Overview
NameDY259902
Unique NameDY259902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length894
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259902 vs. ExPASy Swiss-Prot
Match: SUS2_TULGE (Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.402e-32
Identity = 67/115 (58.26%), Postives = 91/115 (79.13%), Query Frame = 2
Query:  329 MAERALTRVHGLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFES-ISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRSRPGVWEYIQVDGHALVIEELLVTQ 670
            MA+RA+TRVH +RERL +TLSAH+NE+LAL SR   +G+G+LQ HQL+ E+E+ I   +R+ L +G F +VL+A QEAIV+PPWVALA+R RPGVWEY++V+   L +EEL V +
Sbjct:    1 MADRAMTRVHSVRERLTDTLSAHKNELLALFSRFVKQGQGMLQPHQLLTEYEAVIPAADREKLKDGVFEDVLKAAQEAIVIPPWVALAIRPRPGVWEYVRVNVSELAVEELTVPE 115          
BLAST of DY259902 vs. ExPASy Swiss-Prot
Match: SUS1_TULGE (Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.438e-30
Identity = 63/110 (57.27%), Postives = 86/110 (78.18%), Query Frame = 2
Query:  329 MAERALTRVHGLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFES-ISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRSRPGVWEYIQVDGHALVIEE 655
            M ER LTR+H ++ERL ++LS H NE+LAL SR   +GKG+L+ HQL+ E+ES I E +R+ L +G F + LRA+QEAIV+PPWVALA+R RPGVWEY++V+ + L +EE
Sbjct:    1 MTERRLTRIHSIKERLGDSLSHHPNELLALFSRFIKQGKGMLERHQLLTEYESVIPEADREKLKDGVFEDTLRASQEAIVIPPWVALAIRPRPGVWEYVRVNVNELAVEE 110          
BLAST of DY259902 vs. ExPASy Swiss-Prot
Match: SUS2_MAIZE (Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.432e-30
Identity = 62/113 (54.87%), Postives = 89/113 (78.76%), Query Frame = 2
Query:  335 ERALTRVHGLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFES-ISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRSRPGVWEYIQVDGHALVIEELLVTQ 670
            +R L+R+H +RER+ ++LSAH NE++A+ +R++  GKG+LQ HQ+IAE+ + I E  R+ L +GAF +VLRA QEAIV+PPWVALA+R RPGVWEY++V+   L +EEL V +
Sbjct:    7 DRVLSRLHSVRERIGDSLSAHPNELVAVFTRLKNLGKGMLQPHQIIAEYNNAIPEAEREKLKDGAFEDVLRAAQEAIVIPPWVALAIRPRPGVWEYVRVNVSELAVEELRVPE 119          
BLAST of DY259902 vs. ExPASy Swiss-Prot
Match: SUS3_ORYSJ (Sucrose synthase 3 OS=Oryza sativa subsp. japonica GN=SUS3 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.521e-29
Identity = 61/113 (53.98%), Postives = 87/113 (76.99%), Query Frame = 2
Query:  335 ERALTRVHGLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFES-ISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRSRPGVWEYIQVDGHALVIEELLVTQ 670
            ERALTR+H +RER+ ++LSAH NE++A+ SR+  +GKG+LQ HQ+IAE+ + I E  R+ L + A  +VLR  QEAIV+PPW+ALA+R RPGVWEY++++   L +EEL V +
Sbjct:    7 ERALTRLHSMRERIGDSLSAHTNELVAVFSRLVNQGKGMLQPHQIIAEYNAAIPEGEREKLKDSALEDVLRGAQEAIVIPPWIALAIRPRPGVWEYLRINVSQLGVEELSVPE 119          
BLAST of DY259902 vs. ExPASy Swiss-Prot
Match: SUS1_MAIZE (Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.338e-28
Identity = 65/134 (48.51%), Postives = 94/134 (70.15%), Query Frame = 2
Query:  344 LTRVHGLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRSRPGVWEYIQVDGHALVIEELLVTQLTALRRRTCPMEAPMAPSCFILKFD 745
            LTR+H LRERL  T S+H NE++AL SR   +GKG+LQ HQL+AEF+++ + +++      F ++LRA QEAIVLPPWVALA+R RPGVW+YI+V+   L +EEL V++  A + +   +    + S F+L+ D
Sbjct:    5 LTRLHSLRERLGATFSSHPNELIALFSRYVHQGKGMLQRHQLLAEFDALFDSDKEKYAP--FEDILRAAQEAIVLPPWVALAIRPRPGVWDYIRVNVSELAVEELSVSEYLAFKEQ---LVDGQSNSNFVLELD 133          
BLAST of DY259902 vs. ExPASy Swiss-Prot
Match: SUS2_ORYSJ (Sucrose synthase 2 OS=Oryza sativa subsp. japonica GN=SUS2 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.980e-28
Identity = 61/116 (52.59%), Postives = 85/116 (73.28%), Query Frame = 2
Query:  344 LTRVHGLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRSRPGVWEYIQVDGHALVIEELLVTQLTALRRR 691
            L R+H LRERL  T S+H NE++AL SR   +GKG+LQ HQL+AEF+++ E +++      F ++LRA QEAIVLPPWVALA+R RPGVW+YI+V+   L +EEL V++  A + +
Sbjct:    5 LARLHSLRERLGATFSSHPNELIALFSRYVNQGKGMLQRHQLLAEFDALIEADKEKYAP--FEDILRAAQEAIVLPPWVALAIRPRPGVWDYIRVNVSELAVEELSVSEYLAFKEQ 118          
BLAST of DY259902 vs. ExPASy Swiss-Prot
Match: SUS1_HORVU (Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.893e-28
Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = 2
Query:  344 LTRVHGLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRSRPGVWEYIQVDGHALVIEELLVTQLTALRRRTCPMEAPMAPSCFILKFD 745
            LTR+H LRERL  T S+H NE++AL SR   +GKG+LQ HQL+AEF+++ E +++      F ++LRA QEAIVLPPWVALA+R R GVW+YI+V+   L +EEL V++  A + +     A      F+L+ D
Sbjct:    5 LTRLHSLRERLGATFSSHPNELIALFSRYVHQGKGMLQRHQLLAEFDALFESDKEKYAP--FEDILRAAQEAIVLPPWVALAIRPRTGVWDYIRVNVSELAVEELTVSEYLAFKEQLVDEHASRK---FVLELD 133          
BLAST of DY259902 vs. ExPASy Swiss-Prot
Match: SUS2_HORVU (Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.672e-28
Identity = 61/111 (54.95%), Postives = 83/111 (74.77%), Query Frame = 2
Query:  335 ERALTRVHGLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFES-ISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRSRPGVWEYIQVDGHALVIEELLV 664
            ERAL+RVH +RER+  +LSAH NE++A+ SR+  +GKG+LQ HQ+ AE+ + I E  R+ L    F ++LR  QEAIV+PPWVALA+R RPGVWEY++V+   L +EEL V
Sbjct:    7 ERALSRVHSVRERIGHSLSAHTNELVAVFSRLVNQGKGMLQPHQITAEYNAAIPEAEREKLKNTPFEDLLRGAQEAIVIPPWVALAIRPRPGVWEYVRVNVSELGVEELSV 117          
BLAST of DY259902 vs. ExPASy Swiss-Prot
Match: SUS1_ORYSJ (Sucrose synthase 1 OS=Oryza sativa subsp. japonica GN=SUS1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.672e-28
Identity = 59/113 (52.21%), Postives = 87/113 (76.99%), Query Frame = 2
Query:  335 ERALTRVHGLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFES-ISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRSRPGVWEYIQVDGHALVIEELLVTQ 670
            +R L+R+H +RER+ ++LSAH NE++A+ +R+   GKG+LQ HQ+IAE+ + ISE +R+ L +GAF +VLR+ QE IV+ PWVALA+R RPGVWEY++V+   L +E L V +
Sbjct:    7 DRVLSRLHSVRERIGDSLSAHPNELVAVFTRLVNLGKGMLQAHQIIAEYNNAISEADREKLKDGAFEDVLRSAQEGIVISPWVALAIRPRPGVWEYVRVNVSELAVELLTVPE 119          
BLAST of DY259902 vs. ExPASy Swiss-Prot
Match: SUS2_PEA (Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.060e-25
Identity = 58/115 (50.43%), Postives = 84/115 (73.04%), Query Frame = 2
Query:  347 TRVHGLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRK--HLTEGAFGEVLRATQEAIVLPPWVALAVRSRPGVWEYIQVDGHALVIEELLVTQLTALR 685
            TRV  +R+R+ +TLSAHRNE+++LLSR   +GKGILQ H LI E ++I  E+     L  G FG+++ + QEAIVLPP+VA+AVR RPGVWEY++V+   L +E+L V++  + +
Sbjct:    8 TRVPSIRDRVQDTLSAHRNELISLLSRYVAQGKGILQPHNLIDELDNILGEDHATLDLKNGPFGQIINSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVFELSVEQLSVSEYLSFK 122          
The following BLAST results are available for this feature:
BLAST of DY259902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUS2_TULGE3.402e-3258.26Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1[more]
SUS1_TULGE2.438e-3057.27Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1[more]
SUS2_MAIZE5.432e-3054.87Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1[more]
SUS3_ORYSJ3.521e-2953.98Sucrose synthase 3 OS=Oryza sativa subsp. japonica... [more]
SUS1_MAIZE1.338e-2848.51Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1[more]
SUS2_ORYSJ2.980e-2852.59Sucrose synthase 2 OS=Oryza sativa subsp. japonica... [more]
SUS1_HORVU3.893e-2848.51Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 ... [more]
SUS2_HORVU8.672e-2854.95Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 ... [more]
SUS1_ORYSJ8.672e-2852.21Sucrose synthase 1 OS=Oryza sativa subsp. japonica... [more]
SUS2_PEA1.060e-2550.43Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259902 ID=DY259902; Name=DY259902; organism=Citrus clementina; type=EST; length=894bp
TTCTTGTTTTCTCTATGCACTCTGTTTTTCTCTTCCTCCCGATCTTCGTC
TTTTCTTTTAGTTTTGAATTCTTCCTCGAGGTCTAAGATCTTGTTCAATG
CTCTATTCTATCCTGTTGAATTACTTGTTCATATTTTACGCTGATTTTAT
TTGACTACCTCTAGAAACTCATTCCTTAAAAGAATCTCCTCTTTTTCTCT
GTTGCCTTTGCTAGAATTTTCTCCCATGCTTTTGTTGGTGGAATACTATG
AAGAAAAAGGATAAAAAAAAAAGAAAAGCTTTGATCCAAAATTTATCCCT
GTTGAAGTTTTTGTTTGTCTGAAAATCAATGGCCGAACGTGCTTTGACCC
GCGTTCACGGTCTCCGCGAGCGTTTGGATGAGACTCTCTCTGCCCACAGG
AATGAAATCTTGGCCCTTTTGTCAAGGATTGAGGGCAAGGGCAAAGGAAT
CTTGCAAAACCATCAACTTATTGCTGAGTTTGAATCAATTTCTGAGGAAA
ACAGAAAGCATCTAACTGAGGGTGCATTTGGTGAAGTTCTAAGAGCCACC
CAGGAAGCAATTGTTTTGCCTCCGTGGGTAGCGCTTGCCGTGCGTTCAAG
GCCCGGTGTGTGGGAGTACATCCAAGTTGATGGTCATGCCCTTGTCATTG
AGGAGCTGCTTGTAACCCAACTAACTGCACTTCGACGAAGAACTTGTCCA
ATGGAGGCTCCAATGGCACCTTCCTGCTTCATTTTGAAATTTGACCCAAT
TCAGGCCTTTTTTCCTCCCCCCCAATTCTTCTAAGTTTAATGAAAGTGGT
AGGAAATTTCTCTACCCCCTCCCCTTCACCCAACTGTTCCGCAGAACAGA
AAACCTCGAACCCCCGGGGTGGAATTTTCCCCCGTCCCACCGCA
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