DY259902

Overview
NameDY259902
Unique NameDY259902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length894
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY259902 vs. ExPASy Swiss-Prot
Match: SUS2_DAUCA (Sucrose synthase isoform 2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.531e-24
Identity = 54/108 (50.00%), Postives = 76/108 (70.37%), Query Frame = 2 
Query:  362 LRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRSRPGVWEYIQVDGHALVIEELLVTQLTALR 685
            LR+R + T S+HR EI   LSRI+  G GIL+ HQL +EF++IS+ +R  L + A  ++L + QEAIV  PW+ALA+R RPGVWEY++++ H LV+EEL V     L+
Sbjct:    8 LRQRFESTFSSHRQEIFMFLSRIQSLGNGILKPHQLFSEFQAISKIDRLKLEDSALVQLLNSAQEAIVCSPWIALAIRLRPGVWEYVRLNVHQLVVEELTVPDYLYLK 115
[Close]
BLAST of DY259902 vs. ExPASy Swiss-Prot
Match: SUSY_BETVU (Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.324e-11
Identity = 31/53 (58.49%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:  512 LTEGAFGEVLRATQEAIVLPPWVALAVRSRPGVWEYIQVDGHALVIEELLVTQ 670
            L++G F EVLR+ QEAIV+PP+VA+AVR RPGVWEY++V+   L +E+L V++
Sbjct:    7 LSDGPFSEVLRSAQEAIVVPPFVAIAVRPRPGVWEYVRVNVSELNVEQLTVSE 59
[Close]
BLAST of DY259902 vs. ExPASy Swiss-Prot
Match: SUS2_ARATH (Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g49190 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.324e-11
Identity = 41/86 (47.67%), Postives = 60/86 (69.77%), Query Frame = 2 
Query:  419 LSRIEGKGKGILQNHQLIAEF-ESISEENR-KHLTEGAFGEVLRATQEAIVLPPWVALAVRSRPGVWEYIQVDGHALVIEELLVTQ 670
            L R   +GKGILQ+HQLI EF +++  +   + L +  F +VL   QEAIVLPP+VALA+R RPGV EY++V+ + L ++ L V++
Sbjct:   29 LVRYVAQGKGILQSHQLIDEFLKTVKVDGTLEDLNKSPFMKVL---QEAIVLPPFVALAIRPRPGVREYVRVNVYELSVDHLTVSE 111
The following BLAST results are available for this feature:
BLAST of DY259902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUS2_DAUCA1.531e-2450.00Sucrose synthase isoform 2 OS=Daucus carota PE=2 S... [more]
SUSY_BETVU4.324e-1158.49Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS... [more]
SUS2_ARATH4.324e-1147.67Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259902 ID=DY259902; Name=DY259902; organism=Citrus clementina; type=EST; length=894bp
TTCTTGTTTTCTCTATGCACTCTGTTTTTCTCTTCCTCCCGATCTTCGTC
TTTTCTTTTAGTTTTGAATTCTTCCTCGAGGTCTAAGATCTTGTTCAATG
CTCTATTCTATCCTGTTGAATTACTTGTTCATATTTTACGCTGATTTTAT
TTGACTACCTCTAGAAACTCATTCCTTAAAAGAATCTCCTCTTTTTCTCT
GTTGCCTTTGCTAGAATTTTCTCCCATGCTTTTGTTGGTGGAATACTATG
AAGAAAAAGGATAAAAAAAAAAGAAAAGCTTTGATCCAAAATTTATCCCT
GTTGAAGTTTTTGTTTGTCTGAAAATCAATGGCCGAACGTGCTTTGACCC
GCGTTCACGGTCTCCGCGAGCGTTTGGATGAGACTCTCTCTGCCCACAGG
AATGAAATCTTGGCCCTTTTGTCAAGGATTGAGGGCAAGGGCAAAGGAAT
CTTGCAAAACCATCAACTTATTGCTGAGTTTGAATCAATTTCTGAGGAAA
ACAGAAAGCATCTAACTGAGGGTGCATTTGGTGAAGTTCTAAGAGCCACC
CAGGAAGCAATTGTTTTGCCTCCGTGGGTAGCGCTTGCCGTGCGTTCAAG
GCCCGGTGTGTGGGAGTACATCCAAGTTGATGGTCATGCCCTTGTCATTG
AGGAGCTGCTTGTAACCCAACTAACTGCACTTCGACGAAGAACTTGTCCA
ATGGAGGCTCCAATGGCACCTTCCTGCTTCATTTTGAAATTTGACCCAAT
TCAGGCCTTTTTTCCTCCCCCCCAATTCTTCTAAGTTTAATGAAAGTGGT
AGGAAATTTCTCTACCCCCTCCCCTTCACCCAACTGTTCCGCAGAACAGA
AAACCTCGAACCCCCGGGGTGGAATTTTCCCCCGTCCCACCGCA
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