DY259903

Overview
NameDY259903
Unique NameDY259903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1079
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.069e-33
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   82 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            K  +K +HP E R+ E  +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N  PPT+A M  +YE+N +ED FLY+ Y  E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.069e-33
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   82 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            K  +K +HP E R+ E  +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N  PPT+A M  +YE+N +ED FLY+ Y  E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.069e-33
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   82 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            K  +K +HP E R+ E  +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N  PPT+A M  +YE+N +ED FLY+ Y  E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.069e-33
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   82 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            K  +K +HP E R+ E  +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N  PPT+A M  +YE+N +ED FLY+ Y  E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.069e-33
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   82 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            K  +K +HP E R+ E  +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N  PPT+A M  +YE+N +ED FLY+ Y  E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.069e-33
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   82 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            K  +K +HP E R+ E  +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N  PPT+A M  +YE+N +ED FLY+ Y  E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.069e-33
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   82 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            K  +K +HP E R+ E  +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF +++RKRI L PE A+F FV N  PPT+A M  +YE+N +ED FLY+ Y  E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.929e-33
Identity = 62/113 (54.87%), Postives = 88/113 (77.88%), Query Frame = 1
Query:   91 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFGI 429
            +K EHP E+R++E  +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N+ PPT+A M  +Y+E+ +ED FLY+ Y  E+ +G+
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.929e-33
Identity = 62/113 (54.87%), Postives = 88/113 (77.88%), Query Frame = 1
Query:   91 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFGI 429
            +K EHP E+R++E  +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N+ PPT+A M  +Y+E+ +ED FLY+ Y  E+ +G+
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 6.929e-33
Identity = 62/113 (54.87%), Postives = 88/113 (77.88%), Query Frame = 1
Query:   91 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFGI 429
            +K EHP E+R++E  +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++RKRI L  E A+F FV N+ PPT+A M  +Y+E+ +ED FLY+ Y  E+ +G+
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117          
The following BLAST results are available for this feature:
BLAST of DY259903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL1_XENTR1.069e-3356.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENLA1.069e-3356.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT1.069e-3356.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE1.069e-3356.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_HUMAN1.069e-3356.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_CAVPO1.069e-3356.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_BOVIN1.069e-3356.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RAT6.929e-3354.87Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RABIT6.929e-3354.87Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE6.929e-3354.87Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259903 ID=DY259903; Name=DY259903; organism=Citrus clementina; type=EST; length=1079bp
CGACCTTGCCTGCTTTTGTTGCTTATCAATTTTGCGATCTCAGCTACATT
TCTCTCTGAAACGGAAAGCACGCTCATGGCGAAAAATTCTTTTAAGCTAG
AACACCCCCTCGAGAGGAGGCAGGCTGAAGCTGCTCGCATCAGAGACAAG
TATCCAGACAGAATCCCAGTGATTGTGGAGAGGGCCGAAAAAAGTGATGT
ACCTGAAATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTG
GCCAGTTTGTGTATGTGGTGCGAAAGAGGATCAAGCTCAGTCCTGAGAAG
GCTATTTTCATTTTTGTGAAAAACATTCCGCCACCCACTGCGGCAATGAT
GTCTGCCATATATGAGGAAAACAGGGATGAAGATGGCTTCCTTTACATGA
CCTACCGTGGGGAGAATACATTTGGGATCTTCTGAAGTGTGATCACGCTA
CTATCTATGTGAACAATGCTTCAAGAACTTAGGTGAAAAAGGGGTTAAGT
TGTAAATAGTTCTATGTTCCCATTAGTTTGGAATTTCTTTCAGTTAATGG
AATTATATGTACCAACCCAACAATTTGGGAACCACCAACATATCACAAAA
AAATCCATACTTCTCCCCAAGGCCATCCGCCTGCACCAAAAGAAAAAAAA
CAACAAAACCCACTCCCTCCTGCAACACTTTTGGGCATCTTTAAAGAACG
CCATCGGTTCATAAACTTTCCTGTATCAACTCGGCCCTTAATCCTTCCCA
ATTATATCCTCCTCTTTGCCGCCCCCCCTGATTCCCCCTCTTATTAGGGC
GCGTCAATACCGGGGGAAGATGACGCTCTACCCCCACCAACCCCCGCCCC
CGCGCCCCCCCAACACCACCACACCCGCCCTTCGCCCAACCCCTCCAATC
ACTACCCAACAGACACACAATACCACCCACAAACACATAACACTGAACAC
TTGTCTCTTCCACCTATTTCTTACCGCATCATCTCGCCCCTACCCCATCT
CTGTCAAACTCATTCAAGCTCCCCACTCCAACATGCGTAACAAAACATAC
TATTACTCACAAACCACCTCACAAAACTA
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