DY259903

Overview
NameDY259903
Unique NameDY259903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1079
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.330e-17
Identity = 43/114 (37.72%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   91 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV-KNIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFG 426
            FK       R  E  +IR+++P +IPVI+ER + +  +P +DK K+LVP  + + + V ++R+R++L+P +A F+ V ++     +  ++ IYE+ +DEDGFLYM Y  + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 2.026e-16
Identity = 42/123 (34.15%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   79 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIPPPTAAM-MSAIYEENRDEDGFLYMTYRGENTFGIF*SV 441
            ++ +FK     E+R  +   IR+++P +IPVI+ER + +  +P +DK K+LVP  + + + + ++R+R++L+  +A F+ V      + +  +  +YE  +DEDGFLYM Y  + TFG+  SV
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFGMKLSV 125          
BLAST of DY259903 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.893e-16
Identity = 42/123 (34.15%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   79 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK-NIPPPTAAMMSAIYEENRDEDGFLYMTYRGENTFGIF*SV 441
            ++ +FK     E+R  +   IR+++P +IPVI+ER + +  +P +DK K+LVP  + + + + ++R+R++L+  +A F+ V  +     +  +S +YE  +DEDGFLYM    + TFG+  SV
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFGMKLSV 125          
The following BLAST results are available for this feature:
BLAST of DY259903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
MLP3A_BOVIN5.330e-1737.72Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_BOVIN2.026e-1634.15Microtubule-associated proteins 1A/1B light chain ... [more]
MP3B2_HUMAN5.893e-1634.15Microtubule-associated proteins 1A/1B light chain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259903 ID=DY259903; Name=DY259903; organism=Citrus clementina; type=EST; length=1079bp
CGACCTTGCCTGCTTTTGTTGCTTATCAATTTTGCGATCTCAGCTACATT
TCTCTCTGAAACGGAAAGCACGCTCATGGCGAAAAATTCTTTTAAGCTAG
AACACCCCCTCGAGAGGAGGCAGGCTGAAGCTGCTCGCATCAGAGACAAG
TATCCAGACAGAATCCCAGTGATTGTGGAGAGGGCCGAAAAAAGTGATGT
ACCTGAAATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTG
GCCAGTTTGTGTATGTGGTGCGAAAGAGGATCAAGCTCAGTCCTGAGAAG
GCTATTTTCATTTTTGTGAAAAACATTCCGCCACCCACTGCGGCAATGAT
GTCTGCCATATATGAGGAAAACAGGGATGAAGATGGCTTCCTTTACATGA
CCTACCGTGGGGAGAATACATTTGGGATCTTCTGAAGTGTGATCACGCTA
CTATCTATGTGAACAATGCTTCAAGAACTTAGGTGAAAAAGGGGTTAAGT
TGTAAATAGTTCTATGTTCCCATTAGTTTGGAATTTCTTTCAGTTAATGG
AATTATATGTACCAACCCAACAATTTGGGAACCACCAACATATCACAAAA
AAATCCATACTTCTCCCCAAGGCCATCCGCCTGCACCAAAAGAAAAAAAA
CAACAAAACCCACTCCCTCCTGCAACACTTTTGGGCATCTTTAAAGAACG
CCATCGGTTCATAAACTTTCCTGTATCAACTCGGCCCTTAATCCTTCCCA
ATTATATCCTCCTCTTTGCCGCCCCCCCTGATTCCCCCTCTTATTAGGGC
GCGTCAATACCGGGGGAAGATGACGCTCTACCCCCACCAACCCCCGCCCC
CGCGCCCCCCCAACACCACCACACCCGCCCTTCGCCCAACCCCTCCAATC
ACTACCCAACAGACACACAATACCACCCACAAACACATAACACTGAACAC
TTGTCTCTTCCACCTATTTCTTACCGCATCATCTCGCCCCTACCCCATCT
CTGTCAAACTCATTCAAGCTCCCCACTCCAACATGCGTAACAAAACATAC
TATTACTCACAAACCACCTCACAAAACTA
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