DY259909

Overview
NameDY259909
Unique NameDY259909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1108
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1351 contig Ccv1_Contig1351:1..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGM1_MACFA (Phosphoglucomutase-1 OS=Macaca fascicularis GN=PGM1 PE=2 SV=3)

HSP 1 Score: 256.914 bits (655), Expect = 1.539e-67
Identity = 130/216 (60.19%), Postives = 162/216 (75.00%), Query Frame = 2
Query:    5 PTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLV-SKSKAGDKYGN----YVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            PTG+ FFGNLMDA KLS+CGEESFGTGSDHIREKDG+WAVLAWLSI+A R +         SV D++K HW  YGRNFF+RYDYEE E+EGANKM+  L  L+  +S  G ++      Y ++ AD+F Y+DPVDGS++  QG+R +FTDGSRIIFRLSGTGSAGAT+R+YI+ +E DV+K   D Q  L PLI +AL VS+L++ TGR  P +IT
Sbjct:  356 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---------SVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISRNQGLRLIFTDGSRIIFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRSAPTVIT 562          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGMC_SOLTU (Phosphoglucomutase, cytoplasmic OS=Solanum tuberosum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 2.626e-67
Identity = 123/218 (56.42%), Postives = 163/218 (74.77%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYL------RDLVSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FFGNLMDAG  S+CGEESFGTGSDHIREKDGIWAVLAWLSI+A++NKD      L+SV D+V+ HWA YGR++++RYDYE   ++GA  ++ +L       D V+K   G +     +  AD+F Y DPVDGSV+  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+++AL +SK++++T R  P +IT
Sbjct:  366 VPTGWKFFGNLMDAGMCSICGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKDNLGEGNLVSVEDIVRQHWAIYGRHYYTRYDYENVNADGAKDLMAHLVKLQSSIDEVNKLIKGIRSDVSNVVHADEFEYKDPVDGSVSKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDSSKIGRDSQEALAPLVEVALKLSKMQEYTSRSAPTVIT 583          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGM1_HUMAN (Phosphoglucomutase-1 OS=Homo sapiens GN=PGM1 PE=1 SV=3)

HSP 1 Score: 256.144 bits (653), Expect = 2.626e-67
Identity = 129/216 (59.72%), Postives = 162/216 (75.00%), Query Frame = 2
Query:    5 PTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLV-SKSKAGDKYGN----YVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            PTG+ FFGNLMDA KLS+CGEESFGTGSDHIREKDG+WAVLAWLSI+A R +         SV D++K HW  YGRNFF+RYDYEE E+EGANKM+  L  L+  +S  G ++      Y ++ AD+F Y+DPVDGS++  QG+R +FTDGSRI+FRLSGTGSAGAT+R+YI+ +E DV+K   D Q  L PLI +AL VS+L++ TGR  P +IT
Sbjct:  356 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---------SVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISRNQGLRLIFTDGSRIVFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGMC_POPTN (Phosphoglucomutase, cytoplasmic OS=Populus tremula GN=PGM1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 1.303e-66
Identity = 122/218 (55.96%), Postives = 164/218 (75.23%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDL------VSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FFGNLMDAG  SVCGEESFGTGSDHIREKDGIWAVLAWLSI+A++N++   G KL++V D+V  HWATYGR++++RYDYE  ++  A +++  L  L      V++  +G +     +  AD+F Y DPVDGS++  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+ +AL + K+++FTGR  P +IT
Sbjct:  365 VPTGWKFFGNLMDAGLCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNRENLGGGKLVTVEDIVHNHWATYGRHYYTRYDYENVDAGAAKELMACLVKLQSSLTEVNEIVSGIQSDVSKVVHADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQDALAPLVAVALGLXKMQEFTGRSAPTVIT 582          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGM1_MOUSE (Phosphoglucomutase-1 OS=Mus musculus GN=Pgm1 PE=1 SV=3)

HSP 1 Score: 253.447 bits (646), Expect = 1.702e-66
Identity = 128/216 (59.26%), Postives = 161/216 (74.54%), Query Frame = 2
Query:    5 PTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLV-SKSKAGDKYGN----YVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            PTG+ FFGNLMDA KLS+CGEESFGTGSDHIREKDG+WAVLAWLSI+A R +         SV D++K HW  +GRNFF+RYDYEE E+EGANKM+  L  L+  +S  G ++      Y ++ AD+F Y+DPVDGS++  QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E DV+K   D Q  L PLI +AL VS+L++ TGR  P +IT
Sbjct:  356 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---------SVEDILKDHWQKFGRNFFTRYDYEEVEAEGANKMMKDLEALMLDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGM1_BOVIN (Phosphoglucomutase-1 OS=Bos taurus GN=PGM1 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.903e-66
Identity = 129/218 (59.17%), Postives = 159/218 (72.94%), Query Frame = 2
Query:    5 PTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSK-------AGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            PTG+ FFGNLMDA KLS+CGEESFGTGSDHIREKDG+WAVLAWLSI+A R +         SV D++K HW  YGRNFF+RYDYEE E+EGANKM+  L  L+S           GDK   Y ++  D+F Y+DPVDGS++  QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E D++K   D Q  L PLI +AL VS+L++ TGR  P +IT
Sbjct:  356 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---------SVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKELEALISDRSFVGKQFPVGDKV--YTVEKIDNFEYSDPVDGSISRNQGLRLLFADGSRIIFRLSGTGSAGATIRLYIDSYEKDLAKIYQDPQVMLAPLISIALKVSQLQEKTGRTAPTVIT 562          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGM1_RAT (Phosphoglucomutase-1 OS=Rattus norvegicus GN=Pgm1 PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 1.882e-65
Identity = 126/216 (58.33%), Postives = 159/216 (73.61%), Query Frame = 2
Query:    5 PTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLV-SKSKAGDKYGN----YVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            PTG+ FFGNLMDA KLS+CGEESFGTGSDHIREKDG+WAVLAWLSI+A R +          V D++K HW  +GRNFF+RYDYEE E+EGANKM+  L  L+  +S  G ++      Y ++ AD+F Y+DPVDGS++  QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E D +K   D Q  L PLI +AL VS+L++ TGR  P +IT
Sbjct:  356 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---------RVEDILKDHWQKFGRNFFTRYDYEEVEAEGANKMMKDLEALMLDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDAAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGMC_PEA (Phosphoglucomutase, cytoplasmic OS=Pisum sativum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 5.475e-65
Identity = 123/218 (56.42%), Postives = 160/218 (73.39%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDL------VSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FFGNLMDAG  SVCGEESFGTGSDHIREKDGIWAVLAWLSI+A++ KD     KL+SV D+V+ HWATYGR++++RYDYE  ++  A +++ +L  L      V++   G       +   D+F Y DPVDGS++S QG+R++F DGSR+IFRLSGTGS GAT+R+YIEQ+E D SK    +  AL PL++ AL +SK+ +FTGR  P +IT
Sbjct:  366 VPTGWKFFGNLMDAGLCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKTKDNLES-KLVSVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMAHLVKLQSSLPEVNEIIKGASSDVSKVVHGDEFEYNDPVDGSISSHQGIRYLFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDPSKIGRLSHEALAPLVEAALKLSKMEEFTGRSAPTVIT 582          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGM1_RABIT (Phosphoglucomutase-1 OS=Oryctolagus cuniculus GN=PGM1 PE=1 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 1.220e-64
Identity = 127/216 (58.80%), Postives = 158/216 (73.15%), Query Frame = 2
Query:    5 PTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLV-SKSKAGDKYGN----YVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            PTG+ FFGNLMDA KLS+CGEESFGTGSDHIREKDG+WAVLAWLSI+A R +         SV D++K HW  +GRNFF+RYDYEE E+EGA KM+  L  L+  +S  G ++      Y ++ AD+F Y DPVDGSV+  QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E D +K   D Q  L PLI +AL VS+L++ TGR  P +IT
Sbjct:  356 PTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---------SVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGM1_DICDI (Phosphoglucomutase-1 OS=Dictyostelium discoideum GN=pgmA PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 3.321e-62
Identity = 117/220 (53.18%), Postives = 156/220 (70.91%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYL-RDLVSKSKAGDKYG------NYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLAL-SVSKLRDFTGREKPYIIT 637
            VPTG+ FFGNLMDAG LS+CGEESFGTGSDHIREKDGIWA++ WL I+ H N+     +  +S+ ++VK HWA YGRN++SRYDYEE ++  A  M+ ++ + + SK   G K+        Y +   DDF Y DP+D SV+S QG+R +FTDGSRII+RLSGTGS GATVR+Y +++E   ++   D Q+ LK LI +AL  +SKL  +TGR +P +IT
Sbjct:  354 VPTGWKFFGNLMDAGTLSICGEESFGTGSDHIREKDGIWAIICWLQILTHHNQSTN-DKNFVSIEEIVKQHWAKYGRNYYSRYDYEEIDTAPAEAMMKHVSQQIESKQLIGKKFTGISDSLEYEIASCDDFEYKDPIDSSVSSHQGLRIIFTDGSRIIYRLSGTGSTGATVRVYFDKYETQPTQLNNDVQTHLKSLIHIALVEISKLNHYTGRNEPNVIT 572          
The following BLAST results are available for this feature:
BLAST of DY259909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PGM1_MACFA1.539e-6760.19Phosphoglucomutase-1 OS=Macaca fascicularis GN=PGM... [more]
PGMC_SOLTU2.626e-6756.42Phosphoglucomutase, cytoplasmic OS=Solanum tuberos... [more]
PGM1_HUMAN2.626e-6759.72Phosphoglucomutase-1 OS=Homo sapiens GN=PGM1 PE=1 ... [more]
PGMC_POPTN1.303e-6655.96Phosphoglucomutase, cytoplasmic OS=Populus tremula... [more]
PGM1_MOUSE1.702e-6659.26Phosphoglucomutase-1 OS=Mus musculus GN=Pgm1 PE=1 ... [more]
PGM1_BOVIN2.903e-6659.17Phosphoglucomutase-1 OS=Bos taurus GN=PGM1 PE=2 SV... [more]
PGM1_RAT1.882e-6558.33Phosphoglucomutase-1 OS=Rattus norvegicus GN=Pgm1 ... [more]
PGMC_PEA5.475e-6556.42Phosphoglucomutase, cytoplasmic OS=Pisum sativum G... [more]
PGM1_RABIT1.220e-6458.80Phosphoglucomutase-1 OS=Oryctolagus cuniculus GN=P... [more]
PGM1_DICDI3.321e-6253.18Phosphoglucomutase-1 OS=Dictyostelium discoideum G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259909 ID=DY259909; Name=DY259909; organism=Citrus clementina; type=EST; length=1108bp
GGTTCCCACTGGGTTTTAATTTTTTGGTAATCTTATGGATGCTGGGAAGT
TGTCAGTATGTGGGGAAGAAAGTTTTGGTACTGGTTCTGATCACATTCGA
GAGAAAGATGGCATATGGGCTGTGCTGGCTTGGCTTTCAATTGTTGCGCA
CCGAAACAAAGACAAGAAACCAGGGGAAAAGTTGATATCTGTCTCTGATG
TTGTAAAAGCACATTGGGCAACATATGGCAGAAACTTCTTTTCGAGATAC
GACTATGAAGAATGTGAATCTGAAGGAGCAAATAAAATGATAGGATATCT
TAGAGATTTGGTATCTAAGAGCAAAGCAGGCGATAAGTATGGAAATTATG
TTCTTCAATTTGCAGATGACTTTGCATACACTGATCCAGTTGACGGAAGT
GTGGCATCAAAGCAAGGTGTTCGGTTTGTTTTCACAGACGGATCAAGGAT
AATATTTCGTTTATCAGGAACTGGTTCAGCAGGTGCAACTGTTCGAATTT
ACATTGAACAGTTTGAGCCAGATGTCTCTAAACATGAAATGGATGCACAA
TCAGCCTTGAAACCGTTAATAGATCTGGCATTATCTGTTTCCAAATTGAG
GGACTTCACTGGAAGGGAGAAACCCTACATTATCACATAAAGAGCTCTCC
CGTTTATAGTCCCTTTGTATCCAGGGTTATTTTAAGTTGGAGCCTGAGAA
AGGGGCAAACCCACCTTTCATGCTGGAGTTGATTTACCATTACATTTTCC
CGTGCACGGTTCGGATAGAAATTTGCGCTCCTGCGGCACCTCCAATCATT
CCCTGCAATTGACTATCGAATAACCTAGGGCCGAAATTAAACATCCTACT
TCACTAACCTCATACTCTGAATGGCGAACCCACATTTCTATCGCGCCCCT
GGCCATTATACCAACGGATACACCGTGGATTTTCACTCTTTTTCCAAACT
CCTCACTGCCCCCGTGCCGCCCTCCACCCCCCCTCCTTCCTCCTTCATAC
ACCCCCCCTACCCTCACATCCCACACCCCATTCATCTCAACACATGACTT
ACGACTCACTTAGTTTTTCATCCCCAGTTTCTCTCCCGTGCACCTCTCCT
AGCTCTCT
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