DY259909

Overview
NameDY259909
Unique NameDY259909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1108
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1351 contig Ccv1_Contig1351:1..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGM_ASPFU (Phosphoglucomutase OS=Aspergillus fumigatus GN=pgmA PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.071e-52
Identity = 108/214 (50.47%), Postives = 147/214 (68.69%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSK--SKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FF NL D  K+S+CGEESFGTGS+HIREKDG+WA++AWL+I+A   K +KP E   S++ +    W TYGR FF+RYDYE  +S+ ANK+I  L + ++   S  G       +  A +FAYTD +DGSV   QG+   F DGSR++ RLSGTGS+GAT+R+YIE++E D SK  M+ Q  LK  + LA+S+ K +++ GRE P + T
Sbjct:  345 VPTGWKFFCNLFDNKKISICGEESFGTGSNHIREKDGVWAIVAWLNIIAGVAK-QKPNETP-SIASIQNEFWQTYGRTFFTRYDYENVDSDAANKLIANLSEKINNKDSFVGSTVSGRKVADAGNFAYTD-LDGSVTKNQGLYVKFDDGSRLVVRLSGTGSSGATIRLYIEKYESDKSKFGMNTQDYLKDNVALAMSLLKFKEYIGREDPDVKT 555          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGM_ASPOR (Phosphoglucomutase OS=Aspergillus oryzae GN=pgmA PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.827e-52
Identity = 108/214 (50.47%), Postives = 146/214 (68.22%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSK--SKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FF NL D  K+S+CGEESFGTGS+HIREKDG+WA++AWL+I+A   K+K   ++  S++ +    W  YGR FF+RYDYE  +S+GANK+I  L D V+   S  G       +    +F+YTD +DGSV+  QG+   F DGSRII RLSGTGS+GAT+R+YIE++E D SK  + A   LK  + LALS+   ++F GRE+P + T
Sbjct:  345 VPTGWKFFCNLFDNKKISICGEESFGTGSNHIREKDGLWAIVAWLNIIAGVAKEKP--DQTPSIASIQNDFWQAYGRTFFTRYDYENVDSDGANKVIAILSDKVANKDSFVGSTVSGRKVTDVGNFSYTD-LDGSVSKNQGLYAKFDDGSRIIVRLSGTGSSGATIRLYIEKYESDKSKFGLTASEYLKDNVALALSLLNFKEFIGREEPDVRT 555          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGM5_HUMAN (Phosphoglucomutase-like protein 5 OS=Homo sapiens GN=PGM5 PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 2.020e-51
Identity = 102/216 (47.22%), Postives = 146/216 (67.59%), Query Frame = 2
Query:    5 PTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVS-KSKAGDKY--GNYVLQFA--DDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            P G+ FF NLMD+G+ ++CGEESFGTGSDH+REKDG+WAVL WLSI+A R +         SV ++V+ HWA +GR+++ R+DYE  + +    ++  L  LV+ KS  G ++  G++V   A  D F Y DPVDG+V  KQG+R +F+D SR+IFRLS +    AT+R+Y E +E D S H+ + Q+ L PLI +AL +S++ + TGR  P +IT
Sbjct:  361 PAGWRFFSNLMDSGRCNLCGEESFGTGSDHLREKDGLWAVLVWLSIIAARKQ---------SVEEIVRDHWAKFGRHYYCRFDYEGLDPKTTYYIMRDLEALVTDKSFIGQQFAVGSHVYSVAKTDSFEYVDPVDGTVTKKQGLRIIFSDASRLIFRLSSSSGVRATLRLYAESYERDPSGHDQEPQAVLSPLIAIALKISQIHERTGRRGPTVIT 567          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGM2_YEAST (Phosphoglucomutase-2 OS=Saccharomyces cerevisiae GN=PGM2 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 6.081e-48
Identity = 100/216 (46.30%), Postives = 144/216 (66.67%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVAHRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKY--GNYVLQFAD--DFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FF  L DA KLS+CGEESFGTGS+H+REKDG+WA++AWL+I+A  NK     E   S+  +    WA YGR FF+RYD+E+ E+E ANK++  LR  V+KS   +     +  L+  D  DF+YTD +DGSV+  QG+    ++G+R + RLSGTGS+GAT+R+YIE++  D S+++  A+  LKP+I+  +     +   G E+P + T
Sbjct:  357 VPTGWKFFCALFDAKKLSICGEESFGTGSNHVREKDGVWAIMAWLNILAIYNKHHPENE--ASIKTIQNEFWAKYGRTFFTRYDFEKVETEKANKIVDQLRAYVTKSGVVNSAFPADESLKVTDCGDFSYTD-LDGSVSDHQGLYVKLSNGARFVLRLSGTGSSGATIRLYIEKYCDDKSQYQKTAEEYLKPIINSVIKFLNFKQVLGTEEPTVRT 569          
BLAST of DY259909 vs. ExPASy Swiss-Prot
Match: PGM1_YEAST (Phosphoglucomutase-1 OS=Saccharomyces cerevisiae GN=PGM1 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 3.453e-43
Identity = 93/218 (42.66%), Postives = 136/218 (62.39%), Query Frame = 2
Query:    2 VPTGF*FFGNLMDAGKLSVCGEESFGTGSDHIREKDGIWAVLAWLSIVA--HRNKDKKPGEKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKY--GNYVLQFAD--DFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPYIIT 637
            VPTG+ FF  L DA KLS+CGEESFGTGS+HIREKDG+WA++AWL+I+A  HR       EK  S+  +    W  YGR FF+RYDYE  E E A K++  L + VS+      +   +  L   D  DF+Y D +DGS++  QG+   F++G++ + RLSGTGS+GAT+R+Y+E++      +   A   LKP+I+  +   + ++  G ++P + T
Sbjct:  358 VPTGWKFFCALFDAKKLSICGEESFGTGSNHIREKDGLWAIIAWLNILAIYHRRNP----EKEASIKTIQDEFWNEYGRTFFTRYDYEHIECEQAEKVVALLSEFVSRPNVCGSHFPADESLTVIDCGDFSYRD-LDGSISENQGLFVKFSNGTKFVLRLSGTGSSGATIRLYVEKYTDKKENYGQTADVFLKPVINSIVKFLRFKEILGTDEPTVRT 570          
The following BLAST results are available for this feature:
BLAST of DY259909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PGM_ASPFU1.071e-5250.47Phosphoglucomutase OS=Aspergillus fumigatus GN=pgm... [more]
PGM_ASPOR1.827e-5250.47Phosphoglucomutase OS=Aspergillus oryzae GN=pgmA P... [more]
PGM5_HUMAN2.020e-5147.22Phosphoglucomutase-like protein 5 OS=Homo sapiens ... [more]
PGM2_YEAST6.081e-4846.30Phosphoglucomutase-2 OS=Saccharomyces cerevisiae G... [more]
PGM1_YEAST3.453e-4342.66Phosphoglucomutase-1 OS=Saccharomyces cerevisiae G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259909 ID=DY259909; Name=DY259909; organism=Citrus clementina; type=EST; length=1108bp
GGTTCCCACTGGGTTTTAATTTTTTGGTAATCTTATGGATGCTGGGAAGT
TGTCAGTATGTGGGGAAGAAAGTTTTGGTACTGGTTCTGATCACATTCGA
GAGAAAGATGGCATATGGGCTGTGCTGGCTTGGCTTTCAATTGTTGCGCA
CCGAAACAAAGACAAGAAACCAGGGGAAAAGTTGATATCTGTCTCTGATG
TTGTAAAAGCACATTGGGCAACATATGGCAGAAACTTCTTTTCGAGATAC
GACTATGAAGAATGTGAATCTGAAGGAGCAAATAAAATGATAGGATATCT
TAGAGATTTGGTATCTAAGAGCAAAGCAGGCGATAAGTATGGAAATTATG
TTCTTCAATTTGCAGATGACTTTGCATACACTGATCCAGTTGACGGAAGT
GTGGCATCAAAGCAAGGTGTTCGGTTTGTTTTCACAGACGGATCAAGGAT
AATATTTCGTTTATCAGGAACTGGTTCAGCAGGTGCAACTGTTCGAATTT
ACATTGAACAGTTTGAGCCAGATGTCTCTAAACATGAAATGGATGCACAA
TCAGCCTTGAAACCGTTAATAGATCTGGCATTATCTGTTTCCAAATTGAG
GGACTTCACTGGAAGGGAGAAACCCTACATTATCACATAAAGAGCTCTCC
CGTTTATAGTCCCTTTGTATCCAGGGTTATTTTAAGTTGGAGCCTGAGAA
AGGGGCAAACCCACCTTTCATGCTGGAGTTGATTTACCATTACATTTTCC
CGTGCACGGTTCGGATAGAAATTTGCGCTCCTGCGGCACCTCCAATCATT
CCCTGCAATTGACTATCGAATAACCTAGGGCCGAAATTAAACATCCTACT
TCACTAACCTCATACTCTGAATGGCGAACCCACATTTCTATCGCGCCCCT
GGCCATTATACCAACGGATACACCGTGGATTTTCACTCTTTTTCCAAACT
CCTCACTGCCCCCGTGCCGCCCTCCACCCCCCCTCCTTCCTCCTTCATAC
ACCCCCCCTACCCTCACATCCCACACCCCATTCATCTCAACACATGACTT
ACGACTCACTTAGTTTTTCATCCCCAGTTTCTCTCCCGTGCACCTCTCCT
AGCTCTCT
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