DY259915

Overview
NameDY259915
Unique NameDY259915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length887
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259915 vs. ExPASy Swiss-Prot
Match: THI4_METMP (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis GN=MMP1352 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.267e-12
Identity = 56/178 (31.46%), Postives = 83/178 (46.63%), Query Frame = 1
Query:  223 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMETKVVVSSCGHD 738
            E  V++ + +      +   D D    GAG +GL+ A  L++N  ++  ++E+ +S GGG W  G  F  +VV KPA   L E GI  DE     VI    LFT+    + +KL         K+   +  EDLI+K  +V GVV     +         +DP  +  K V+ S GHD
Sbjct:    9 EVAVTKSILKSTFDMWMDLIDVDVVIVGAGPSGLTAAKYLAQN-GVKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADEILREAGIKLDE-----VIGEPELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKVSGVVIQSYSI---EKAGLHIDPITISAKYVIDSTGHD 177          
BLAST of DY259915 vs. ExPASy Swiss-Prot
Match: THI4_METM7 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0597 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.867e-12
Identity = 54/178 (30.34%), Postives = 82/178 (46.07%), Query Frame = 1
Query:  223 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMETKVVVSSCGHD 738
            E  V++ + +      +   D D    GAG +GL+ A  L++N  ++  ++E+ +S GGG W  G  F  +VV KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  +  K V+ S GHD
Sbjct:    9 EVAVTKSILKSTFNMWMDIIDVDVVIIGAGPSGLTAAKYLAQN-GVKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADEILREAGIKLDEVDG-----EDELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAI---EKAGLHIDPLTISAKYVIDSTGHD 177          
BLAST of DY259915 vs. ExPASy Swiss-Prot
Match: THI4_METJA (Putative thiazole biosynthetic enzyme OS=Methanocaldococcus jannaschii GN=MJ0601 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.470e-11
Identity = 48/153 (31.37%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  283 DTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGID-YDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMETKVVVSSCGHD 738
            + D    GAG +GL+CA  L+K    ++ ++E+ ++ GGG W  G  F  +VV +PA   L E+GI   D  D Y V     +     ++ + A    K+   +  EDLI++   V GVV N   +         +DP  + +KVVV + GH+
Sbjct:   32 EADVVIVGAGPSGLTCARYLAKE-GFKVVVLERHLAFGGGTWGGGMGFPYIVVEEPADELLREVGIKLIDMGDGYYVADSVEVPAKLAVAAMDA--GAKILTGIVVEDLILREDGVAGVVINSYAIER---AGLHIDPLTIRSKVVVDATGHE 178          
BLAST of DY259915 vs. ExPASy Swiss-Prot
Match: THI4_SULTO (Putative thiazole biosynthetic enzyme OS=Sulfolobus tokodaii GN=ST0361 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.919e-11
Identity = 49/185 (26.49%), Postives = 86/185 (46.49%), Query Frame = 1
Query:  190 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMETKVVVSSCGHD 738
            D N+ K   + E  +S+ + +    D     ++D    GAG +G++ AY L+K   ++  + E+ +S GGG      LF  +V+  PA   L E+ I  ++ +  V I  +A F + + +  +     K+ + V  +D+I +    +V GV   W    M       +DP  +  K VV + GHD
Sbjct:    2 DSNSIKVKQVDEVKISKYILKYTFQDWEDIVESDVVIVGAGPSGMTAAYYLAK-AGLKTVVFERRLSFGGGIGGGAMLFHKIVIESPADEILKEMKIKLNKVEEGVYIVDSAEFMAKLAASAIDA-GAKIIHGVTVDDVIFRENPLKVVGVAVEWTATQM---AGLHVDPLFISAKAVVDATGHD 181          
BLAST of DY259915 vs. ExPASy Swiss-Prot
Match: THI4_METM5 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0226 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.919e-11
Identity = 53/178 (29.78%), Postives = 81/178 (45.51%), Query Frame = 1
Query:  223 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMETKVVVSSCGHD 738
            E  V++ + +      +   D D    GAG +GL+ A  L++   ++  ++E+ +S GGG W  G  F  +VV KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  +  K V+ S GHD
Sbjct:    9 EVAVTKSILKSTFNMWMDVIDVDVVIVGAGPSGLTAAKYLAQK-GVKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADEILREAGIKLDEVDG-----EDELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAI---EKAGLHIDPLTISAKYVIDSTGHD 177          
BLAST of DY259915 vs. ExPASy Swiss-Prot
Match: THI4_METM6 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_1321 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.274e-11
Identity = 53/178 (29.78%), Postives = 80/178 (44.94%), Query Frame = 1
Query:  223 ESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTS---TIMSKL---LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMETKVVVSSCGHD 738
            E  V++ + +      +   D D    GAG +GL+ A  L++    +  ++E+ +S GGG W  G  F  +VV KPA   L E GI  DE D         LFT+    + +KL         K+   +  EDLI+K  ++ GVV     +         +DP  +  K V+ S GHD
Sbjct:    9 EVAVTKSILKSTFNMWMDIIDVDVVIVGAGPSGLTAAKYLAQK-GFKTVVLERHLSFGGGTWGGGMGFPNIVVEKPADDILREAGIKLDEVDG-----EEELFTADSVEVPAKLGVAAIDAGAKILTGIVVEDLILKEDKIAGVVIQSYAI---EKAGLHIDPLTISAKYVIDSTGHD 177          
BLAST of DY259915 vs. ExPASy Swiss-Prot
Match: THI4_METS5 (Putative thiazole biosynthetic enzyme OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2221 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 52/187 (27.81%), Postives = 87/187 (46.52%), Query Frame = 1
Query:  193 LNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMETKVVVSSCGHD 738
            +N  + D IK   ++R + +    D + ++  D    GAG +GL+ AY  +K   ++  + E+ +S GGG      LF  +V+  PA   L E+G+   + +  V +    + +S  M+KL A       K+ + V  +D+I +    RV GV   W    M       +DP  +  K VV + GHD
Sbjct:    1 MNIKQVDEIK---ITRYILKATFEDWMDFSVNDVVIVGAGPSGLAAAYYSAK-AGLKTTVFERRLSFGGGIGGGAMLFHKIVIESPADEILREIGVKLQKFEEGVYV----VDSSEFMAKLAAATIDAGAKIIHGVTVDDVIFRENPLRVTGVAVEWTATQM---ASLHVDPLFISAKAVVDATGHD 176          
The following BLAST results are available for this feature:
BLAST of DY259915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
THI4_METMP2.267e-1231.46Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM73.867e-1230.34Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METJA1.470e-1131.37Putative thiazole biosynthetic enzyme OS=Methanoca... [more]
THI4_SULTO1.919e-1126.49Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METM51.919e-1129.78Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM63.274e-1129.78Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METS57.294e-1127.81Putative thiazole biosynthetic enzyme OS=Metallosp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259915 ID=DY259915; Name=DY259915; organism=Citrus clementina; type=EST; length=887bp
GTAAAAAAAAAAAACATGGCAGCCATGGCTTCTACAGCTTTCGCTCCTTC
AGTTTCGTCTACCACCAATAAGCTCTTTGACTCATCCTTTCATGGGGCTC
CCATGTCACCTTCTCTTCTACGTCTTCAACCCATCAAATCTTCTCGTCCC
AACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTTATGACTTGAACAC
TTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTCTCGTGAAATGACGC
GCAGGTACATGACGGACATGATCACTTATGCTGACACTGATGTGGTAGTG
GTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATGAGCTCAGCAAAAA
CCCCAACATTCAGATTGCTATTATCGAACAGTCTGTTAGCCCCGGCGGTG
GCGCGTGGCTCAGTGGACAGCTCTTCTCTGCCATGGTTGTGCGCAAACCA
GCCCACATCTTCCTTGACGAGCTTGGCATCGACTACGATGAGCAAGACAG
CTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCACTATAATGAGCA
AGCTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGCAGTGGCAGCCGAG
GACTTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTGACCAACTGGGC
GTTGGTGTCAATGAATCACGATACACAGTCTTGCATGGATCCCAATGTAA
TGGAAACGAAAGTGGTTGTGAGCTCCTGTGGCCATGATGGGCCTTTTGGG
GCCCCTGGAGTAAAGAGGTGAAGAATTACGGAAATGATGAGGAAGTGGCT
GGAAAGGAAGGCCTGGACATGAACTCCGCCAAAAATGCCATTGTGAGGCT
GAACAGGGAAGGTGTGCCCGGTATGATATTTACCGGG
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