DY259918

Overview
NameDY259918
Unique NameDY259918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length894
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259918 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.535e-11
Identity = 39/127 (30.71%), Postives = 64/127 (50.39%), Query Frame = 3
Query:  324 FPFVAVQEATNNFDESWVIGIGGF---GKVYKGELNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYGSGLPSLSWKQKLEICIGSARGLHY 695
            F    ++ AT+ F    ++   G      VYKG+L +  ++AVKR N +S     +F  E + + Q R+  + +L+G C E  E +LI E+M N TL  HL+      + W  +L + +  A+ L Y
Sbjct:   44 FSIETIRNATSGFAAENIVSEHGERAPNVVYKGKLENQRRIAVKRFNRKSWPDSRQFLEEAKAVGQLRNHRMANLLGCCYEDEERLLIAEFMPNETLAKHLFHWESQPMKWAMRLRVALHIAQALEY 170          
BLAST of DY259918 vs. ExPASy Swiss-Prot
Match: Y9955_DICDI (Probable serine/threonine-protein kinase DDB_G0267514 OS=Dictyostelium discoideum GN=DDB_G0267514 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.925e-11
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 3
Query:  378 IGIGGFGKVYKGELNDGTKVAVKR---GNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYGSGLPSLSWKQKLEICIGSARGLHYLHTGYAKAVIPRDVKS 743
            +G G FG VYKG L  G+ VA+K+       + Q L EF+ E+ +LS+ RH ++V L+  C     +  I EY+  G+L   L+   +  ++ +   ++ I  A+G++YLH      VI RD+KS
Sbjct:  668 LGEGTFGVVYKG-LWRGSSVAIKQIKINEDVNNQVLEEFRKELTILSRLRHPNIVLLMAACTAPPNLCFITEYLPGGSLYDALHSKKI-KMNMQLYKKLAIQIAQGMNYLH---LSGVIHRDIKS 787          

HSP 2 Score: 26.1794 bits (56), Expect = 2.925e-11
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  748 NILPDENFMAKVADFGMSK 804
            N+L DE+   K+ DFG+SK
Sbjct:  789 NLLLDEHMNVKICDFGLSK 807          
BLAST of DY259918 vs. ExPASy Swiss-Prot
Match: STK_HYDAT (Tyrosine-protein kinase STK OS=Hydra attenuata GN=STK PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 3.860e-11
Identity = 37/120 (30.83%), Postives = 62/120 (51.67%), Query Frame = 3
Query:  378 IGIGGFGKVYKGELNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYGSGLPSLSWKQKLEICIGSARGLHYLHTGYAKAVIPRDV 737
            +G G FG+V+ G  N+ T+VAVK   P +    A F  E  ++ + RH+HLV L   C ++  + ++ EYM  G+L  +L      +L     +++    A G+ +L    A+  I RD+
Sbjct:  246 LGAGQFGEVWAGVWNNTTQVAVKTLKPGTMSP-ASFLDEAGVMKKLRHKHLVQLYAICSDREPIYIVTEYMSGGSLLDYLSKGEGVNLQLPTLIDMAAQVASGMAFLE---AQGYIHRDL 361          

HSP 2 Score: 28.4906 bits (62), Expect = 3.860e-11
Identity = 11/19 (57.89%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  748 NILPDENFMAKVADFGMSK 804
            NIL  EN++ KVADFG+++
Sbjct:  365 NILVGENYICKVADFGLAR 383          
BLAST of DY259918 vs. ExPASy Swiss-Prot
Match: EFR_ARATH (LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.912e-11
Identity = 53/147 (36.05%), Postives = 66/147 (44.90%), Query Frame = 3
Query:  339 VQEATNNFDESWVIGIGGFGKVYKGELNDGTK-VAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYC----DEKNEM-ILIYEYMENGTLKGHLYGSGLP-------SLSWKQKLEICIGSARGLHYLHTGYAKAVIPRDVK 740
            +  AT+ F  + +IG G FG V+KG L    K VAVK  N         F  E E     RHR+LV LI  C     E N+   L+YE+M  G+L   L    L        SL+  +KL I I  A  L YLH      V   D+K
Sbjct:  705 LHSATSRFSSTNLIGSGNFGNVFKGLLGPENKLVAVKVLNLLKHGATKSFMAECETFKGIRHRNLVKLITVCSSLDSEGNDFRALVYEFMPKGSLDMWLQLEDLERVNDHSRSLTPAEKLNIAIDVASALEYLHVHCHDPVAHCDIK 851          

HSP 2 Score: 23.483 bits (49), Expect = 4.912e-11
Identity = 9/19 (47.37%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  748 NILPDENFMAKVADFGMSK 804
            NIL D++  A V+DFG+++
Sbjct:  854 NILLDDDLTAHVSDFGLAQ 872          
BLAST of DY259918 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 63/236 (26.69%), Postives = 101/236 (42.80%), Query Frame = 3
Query:   84 GNSSSKKHXXXXXXXXXXXXXAALLAGILFMLC--RKRRQLPQLGHSKAWIP-VSINGGNSHTMGSKYSHGTTTSANSNSGYRFPFVAVQE------------ATNNFDESWVIGIGGFGKVYKGELNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYGSGLPSLSWKQKLEICIGSARGLHYLHTGYAKAVIPRDVKSA 746
            G   +KK+             A LL G+L +L   R RR+      S+ W   ++IN    +   S   H +TT     +  + P V + +            AT NFD   ++  G  G  Y   L  G + A+K     +     E     E L++  H +L  L GYC    + I IYE ++   L+  L+ +G  S  W+ + +I +G+AR L +LH G    ++  +VK+A
Sbjct:  425 GKKVNKKNTGLKIGLGLAISMAFLLIGLLLILVALRVRRK------SRTWATKLAINNTEPN---SPDQHDSTTDIKQAT--QIPVVMIDKPLMKMTLADLKAATFNFDRGTMLWEGKSGPTYGAVLPGGFRAALKVIPSGTTLTDTEVSIAFERLARINHPNLFPLCGYCIATEQRIAIYEDLDMVNLQSLLHNNGDDSAPWRLRHKIALGTARALAFLHHGCIPPMVHGEVKAA 649          
BLAST of DY259918 vs. ExPASy Swiss-Prot
Match: IRAK2_BOVIN (Interleukin-1 receptor-associated kinase-like 2 OS=Bos taurus GN=IRAK2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11
Identity = 47/143 (32.87%), Postives = 72/143 (50.35%), Query Frame = 3
Query:  333 VAVQEATNNFDESWVIGIGGFGKVYKGELNDGTKVAVKRGNPRSQQGLAE----FQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLYG-SGLPSLSWKQKLEICIGSARGLHYLHTGYAKAVIPRDVKSA 746
            V V +AT+NF+ S  I  G F  VY+G    GT    K+    +  G       FQ E+++  +  H +++ L+G C  +    LIY YM NG+L+  L G  G   L W Q++ IC G    + +LH   +  +I  +VKS+
Sbjct:  197 VDVIQATDNFNPSHKISEGTFADVYRGHKR-GTPFIFKKLREMACSGPGSVEKFFQAEVQICRRCCHPNVLPLLGCCTGEQFYSLIYPYMANGSLQDRLQGQGGSDPLPWPQRISICSGLLHAVEHLH---SLEIIHGNVKSS 335          
BLAST of DY259918 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  369 SWVIGIGGFGKVYKGELNDGTKVAVKR--GNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMENGTLKGHLY----GSGLP-SLSWKQKLEICIGSARGLHYLH 701
            ++++G  G   +YK  L DG   AV+R   N  SQ+   +F+  I  + +  H +LV L G+    +E ++IY+++ NG+L    Y    GS  P  L W+ +L+I  G ARGL YLH
Sbjct:  452 AYILGATGSSIMYKAVLEDGRVFAVRRLGENGLSQRRFKDFEPHIRAIGKLVHPNLVRLCGFYWGTDEKLVIYDFVPNGSLVNPRYRKGGGSSSPYHLPWETRLKIAKGIARGLAYLH 569          
The following BLAST results are available for this feature:
BLAST of DY259918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
Y5126_ARATH2.535e-1130.71Probable serine/threonine-protein kinase At5g41260... [more]
Y9955_DICDI2.925e-1134.40Probable serine/threonine-protein kinase DDB_G0267... [more]
STK_HYDAT3.860e-1130.83Tyrosine-protein kinase STK OS=Hydra attenuata GN=... [more]
EFR_ARATH4.912e-1136.05LRR receptor-like serine/threonine-protein kinase ... [more]
Y5815_ARATH5.647e-1126.69Probably inactive leucine-rich repeat receptor-lik... [more]
IRAK2_BOVIN7.375e-1132.87Interleukin-1 receptor-associated kinase-like 2 OS... [more]
Y4372_ARATH9.632e-1135.59Probable LRR receptor-like serine/threonine-protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YJ23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259918 ID=DY259918; Name=DY259918; organism=Citrus clementina; type=EST; length=894bp
GATCTACTCTTTATGACACTTACCCTGATGCCATTCTAAATGGGCTGGAG
ATCATGAAAATGAAAAACTTGCAGGGCAGCCTCGGTAATTCGAGCTCAAA
GAAGCATGTCGGAGTTATCGTGGGAGTAACCATTGGGGTATCTGTTGCGG
CATTGTTGGCTGGAATTCTTTTTATGTTGTGCAGGAAAAGAAGACAATTG
CCACAGCTGGGACATTCAAAGGCATGGATACCTGTATCCATTAATGGAGG
AAATTCTCACACAATGGGAAGTAAATACTCTCATGGAACCACGACAAGCG
CCAATTCTAACTCGGGTTACCGCTTCCCTTTTGTTGCTGTTCAAGAAGCC
ACAAACAACTTCGACGAGAGCTGGGTTATTGGGATTGGTGGTTTTGGGAA
GGTATACAAAGGAGAGCTGAATGATGGTACAAAAGTGGCTGTTAAGAGGG
GAAACCCCCGATCCCAGCAGGGACTTGCAGAGTTCCAAACCGAGATTGAG
ATGCTGTCTCAGTTCCGGCACCGCCATCTGGTTTCATTAATTGGATATTG
TGATGAAAAGAATGAGATGATCTTGATTTATGAATATATGGAAAATGGGA
CCCTCAAGGGTCATCTCTATGGCTCCGGTCTTCCCAGCTTGAGTTGGAAG
CAGAAACTTGAGATTTGCATTGGATCTGCTAGGGGACTTCATTACCTTCA
CACTGGCTATGCCAAAGCAGTTATTCCACGTGATGTAAAGTCTGCCAAAT
ATCCTACCTGATGAGAACTTCATGGCAAAGGTTGCTGATTTTGGAATGTC
CAAAACAGGGACTGAAATTGATCCAACCCATGTGAATACGGCATTGAAAA
GAAATTTGGGGTATTTTGATCTCGAATACTTCAAAAGGCCTCAA
back to top