DY259923

Overview
NameDY259923
Unique NameDY259923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length993
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.422e-62
Identity = 103/166 (62.05%), Postives = 135/166 (81.33%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            L+   ++AIRR+RKTDNNRIA+ACGA IV+ P+EL+E DVGTGAGL E+KKIGDE+F FI +CKDPKACT+LLRGASK++L++VERNL+DAM V RN++ +P+LVPGGGA+E+ V+  L +KS ++ G+E+WPY A A A E IPRTL  NCG +  R +T+L  K
Sbjct:  304 LMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAK 469          

HSP 2 Score: 36.1946 bits (82), Expect = 5.422e-62
Identity = 19/57 (33.33%), Postives = 29/57 (50.88%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            L+ KH        G++G  G + D+K+  I +P         TA+E A +LL+ DDI
Sbjct:  466 LRAKHTQENCETWGVNGETGTLVDVKELGIWEPLAVKLQTYKTAVETAVLLLRIDDI 522          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.901e-60
Identity = 95/161 (59.01%), Postives = 129/161 (80.12%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            ++A RRLRKTDNNR+A+A GA IV+  DE++ESD+GTG GLFE++KIG+E+FAF  +CKDPKACT++LRG SKD+LN++ERNL DAM V RN++ +P+L+PGGGATE+ VS  L++    +EG+++ P+ A   A E IPRTLA NCG++V RT+T L  K
Sbjct:  324 ITAFRRLRKTDNNRVARATGATIVSRTDEIRESDIGTGCGLFEMRKIGEEYFAFFEECKDPKACTIILRGGSKDVLNEIERNLTDAMQVVRNVVFDPRLLPGGGATEMAVSVGLRKAGLKLEGIQQGPFLAVGDAMEVIPRTLAQNCGVSVIRTVTQLRAK 484          

HSP 2 Score: 43.5134 bits (101), Expect = 2.901e-60
Identity = 19/51 (37.25%), Postives = 31/51 (60.78%), Query Frame = 3
Query:  528 GIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPLTSRK 680
            GIDG  G + DM++  + +P       + TA+E+ACM+L+ DDI   + +K
Sbjct:  506 GIDGTTGKLVDMEEFGVWEPFSVKVQTIKTAVESACMILRIDDIVSGSKKK 556          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.859e-59
Identity = 104/166 (62.65%), Postives = 124/166 (74.70%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            L+  G++AIRRLRKTDN RIA+ACGA IVN  +EL E DVGTGAGLFEVKKIGDE+F F+ +CK+PKACT+LLRGASKD+LN+ ERNL+DA+ VARN++  P+LV GGGA E+  S  L +K        K PY A A A E IPRTLA NCG N  R +TAL  K
Sbjct:  306 LLKAGITAIRRLRKTDNLRIARACGATIVNRTEELTEKDVGTGAGLFEVKKIGDEYFTFVTECKEPKACTILLRGASKDILNETERNLQDALHVARNLVLEPRLVAGGGAVEMAASQLLTRKQ------VKGPYTAVAHALEIIPRTLAQNCGANTIRALTALRAK 465          

HSP 2 Score: 42.3578 bits (98), Expect = 1.859e-59
Identity = 26/61 (42.62%), Postives = 33/61 (54.10%), Query Frame = 3
Query:  489 LQGKHAN----GANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            L+ KHA+    G  AW GIDG  G I DM  + I +P         TA+E A +LL+ DDI
Sbjct:  462 LRAKHASHTGDGVCAW-GIDGESGEIVDMNVKNIWEPLAVKLQTYKTAVETAILLLRIDDI 521          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPG_YEAST (T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae GN=CCT3 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 2.638e-58
Identity = 91/166 (54.82%), Postives = 129/166 (77.71%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            L+  G S +RR++K+DNNRIA+  GA IVN  ++L+ESDVGT  GLF+V+ IGDE+F+F+ +CK+PKACT++LRG SKD+LN+++RNL+DAM+VARN++ +P L PGGGATE+ VS  L +K+  +EG+++WPY+A A A E IPRTL  N G +  R ++ L  K
Sbjct:  309 LLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAK 474          

HSP 2 Score: 48.1358 bits (113), Expect = 2.638e-58
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            L+ KHA G N   GIDG+ G I DM    I +P       + TAIE+AC+LL+ DDI
Sbjct:  471 LRAKHAQG-NFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDI 526          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.104e-33
Identity = 62/155 (40.00%), Postives = 99/155 (63.87%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGIN 466
            L   GV A+RR++K+D  +++KA GA IV   ++L   D+G  AG+   KKI  E   F+ +CK+PKA T+L+RG+++ ++++VER + DA+ V    + + K+V GGGA E+ ++  LK  + SI G E+    A A A E +P+TLA N G++
Sbjct:  298 LAKAGVLAVRRVKKSDMEKLSKATGANIVTNIEDLSPEDLGE-AGVVSEKKISGEEMIFVEECKEPKAVTILVRGSTEHVVSEVERAIEDAIGVVAATVEDGKVVAGGGAPEIEIAKRLKDYADSISGREQLAVSAFAEALEIVPKTLAENAGLD 451          

HSP 2 Score: 42.3578 bits (98), Expect = 3.104e-33
Identity = 21/67 (31.34%), Postives = 37/67 (55.22%), Query Frame = 3
Query:  504 ANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPLTSRKNRPPGLRQ 704
            A+  + ++GID   G I DMK+  + +PH      + +A EAA M+L+ DD+   +S  +   G+ +
Sbjct:  462 AHEESTYMGIDVFDGKIVDMKEAGVIEPHRVKKQAIQSAAEAAEMILRIDDVIAASSSGSSEEGMEE 528          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.568e-32
Identity = 66/165 (40.00%), Postives = 106/165 (64.24%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALAR 496
            L   G+ A+RR++++D  +IAKACGA I+    E+  +D+G  A L E +K+GDE   FI  CK+PKA T+L+RG S+ ++++VER+L+DA+ V +  + + K+V GGGA E+ V+  ++  + ++ G E+   EA A A E IPR LA N G++    +  L +
Sbjct:  305 LAKAGILAVRRVKQSDIEKIAKACGAKIITDLREITSADLGE-AELVEERKVGDEKMVFIEGCKNPKAVTILIRGGSEHVVDEVERSLQDAIKVVKTALESGKVVAGGGAPEIEVALKIRDWAPTLGGREQLAAEAFASALEVIPRALAENSGLDPIDILVELRK 468          

HSP 2 Score: 32.3426 bits (72), Expect = 2.568e-32
Identity = 16/57 (28.07%), Postives = 30/57 (52.63%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            L+  H  G   + G+D   G ++ MK++ + +P       + +A E A M+L+ DD+
Sbjct:  466 LRKAHEEGKTTY-GVDVFSGEVACMKERGVLEPLKVKTQAITSATEVAIMILRIDDV 521          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.344e-32
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            G+ A+RR++K+D  ++AKA GA IV   D+L  S +G  A   E +KIGD+   F++ CK+PKA ++L+RG +  ++++VER L DA+ V      + K + GGGA E  ++  L + ++S+ G E+   EA A A E IPRTLA N GI+   T+  L
Sbjct:  306 GIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGE-AETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKL 463          

HSP 2 Score: 43.5134 bits (101), Expect = 3.344e-32
Identity = 22/70 (31.43%), Postives = 40/70 (57.14%), Query Frame = 3
Query:  483 LPLQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPLTSRKNRPP 692
            + L+ +H  G  + +G+D +   + DMK + + DP       L +A+E A M+L+ DD+  + S+K+ PP
Sbjct:  461 IKLKAEHEKGRIS-VGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDV--IASKKSTPP 527          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.617e-32
Identity = 64/162 (39.51%), Postives = 100/162 (61.73%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            G+ A+RR++K+D  ++A+A GA IV   D+L E D+G  A + E KK+  +   F+  CKDPKA T+L+RG ++ ++++ ER + DA+ V    + + K+V GGGA E+ V+  L+  +  +EG E+   EA A A E IPRTLA N G++    +  L  K
Sbjct:  311 GILAVRRVKKSDMQKLARATGARIVTNIDDLSEEDLGE-AEVVEEKKVAGDKMIFVEGCKDPKAVTILIRGGTEHVVDEAERAIEDAIGVVAAALEDGKVVAGGGAPEVEVARQLRDFADGVEGREQLAVEAFADALEIIPRTLAENSGLDPIDVLVQLRAK 471          

HSP 2 Score: 35.8094 bits (81), Expect = 9.617e-32
Identity = 20/57 (35.09%), Postives = 31/57 (54.39%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            L+ KH +G     GID   G + DM ++ + +P       L +A EAA M+L+ DD+
Sbjct:  468 LRAKHEDG-QVTAGIDVYDGDVKDMLEEGVVEPLRVKTQALASATEAAEMILRIDDV 523          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.105e-31
Identity = 63/160 (39.38%), Postives = 102/160 (63.75%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTM 481
            L   G+ A+RR++K+D  ++AKA GA IV    +L   D+G  A L E +K+  E   F+  CK+PKA T+L+RG ++ ++++VER L DA+ V ++I+ + K++ GGGA+E+ +S  L + +  + G E+   EA A A + IPRTLA N G++   T+
Sbjct:  305 LAKYGILAVRRVKKSDMEKLAKATGAKIVTNIRDLTPEDLGE-AELVEERKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAIKVVKDILEDGKIIAGGGASEIELSIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETL 463          

HSP 2 Score: 33.113 bits (74), Expect = 6.105e-31
Identity = 17/57 (29.82%), Postives = 29/57 (50.88%), Query Frame = 3
Query:  525 IGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPLTSRKNRPPG 695
            IGID   G  +DM ++ + +P       + +A EAA M+L+ DD+   +  +    G
Sbjct:  477 IGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIAASKLEKEKEG 533          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.951e-31
Identity = 61/163 (37.42%), Postives = 98/163 (60.12%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            L   GV A+RR++K+D  ++AKA GA ++    ++   D+G  A L E +K+GDE   F+  CK+PKA T+L+RG ++ ++ ++ R + DA+      + + K+V G GA E+ VS  L++ + S+ G E+   EA A A E IPRTLA N G++    +  L
Sbjct:  305 LAKAGVLAVRRVKKSDMEKLAKATGAKVLTDLRDISSEDLGEAA-LVEERKVGDEKMVFVTGCKNPKAVTILVRGGTEHVVEEIARGIEDAVRAVACAVEDGKVVVGAGAPEIEVSLKLREWAPSLGGREQLAVEAFATALEIIPRTLAENAGLDPIDVLVEL 466          

HSP 2 Score: 36.965 bits (84), Expect = 7.951e-31
Identity = 18/57 (31.58%), Postives = 31/57 (54.39%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            L+  H  G   + G+D + G + DMK++ + +P       + +A E A M+L+ DDI
Sbjct:  466 LKAAHEKGQK-YAGVDVDTGKVVDMKERGVFEPLRVKTQAIGSATEVAVMILRIDDI 521          
The following BLAST results are available for this feature:
BLAST of DY259923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TCPG_MACFA5.422e-6262.05T-complex protein 1 subunit gamma OS=Macaca fascic... [more]
TCPG_THAWE2.901e-6059.01T-complex protein 1 subunit gamma OS=Thalassiosira... [more]
TCPG_DROME1.859e-5962.65T-complex protein 1 subunit gamma OS=Drosophila me... [more]
TCPG_YEAST2.638e-5854.82T-complex protein 1 subunit gamma OS=Saccharomyces... [more]
THSB_METTH3.104e-3340.00Thermosome subunit beta OS=Methanobacterium thermo... [more]
THSA_ARCFU2.568e-3240.00Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]
THSA_THEAC3.344e-3240.88Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
THS_METKA9.617e-3239.51Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]
THS_PYRHO6.105e-3139.38Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THSB_ARCFU7.951e-3137.42Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259923 ID=DY259923; Name=DY259923; organism=Citrus clementina; type=EST; length=993bp
TCTAATCACCGTTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACA
ATAATAGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACACACCAGAT
GAATTGCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAA
GAAAATTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAA
AAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAC
GTGGAAAGAAATTTGCGGGATGCAATGTCTGTGGCAAGAAACATAATCAA
CAATCCGAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCCG
CCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCCTCGAAAAGTGGCCT
TATGAAGCTGCTGCTATCGCTTTTGAGGCTATACCAAGAACTTTGGCTCA
TAATTGTGGGATTAATGTATTTCGGACCATGACTGCCCTTGCAAGGAAAA
CACGCTAATGGTGCAAATGCATGGATCGGCATAGATGGAAACCCTGGTGC
AATTTCTGACATGAAACAGCAGAAGATCCGGGATCCCCATCATGCGAACG
CCCCACCTCTTAATACCGCCATTGAAGCTGCCTGCATGCTTCTCAAGAAC
GATGACATTTGTCCATTGACATCAAGAAAAAACAGGCCCCCTGGGTTAAG
ACAAACCTCCTCAAAACCCTCGATAGTAACCGTAAGCCACTCCTCCCATC
GATCTAATTTCCCCTGGAACACATCGCTTTTCTATGTCACGTCGTGCCTA
ATCTAACTCTTTTGAATACCACGTAGCGCCTACTCTCTACTGAATCCTCC
CCCCCCTACTATGCTCAACTCTCCCCTCCATAGTTCGTGTCTAGAGACAC
TTGTAATAGGATATTGGAGCAAACTCATCTAAGGATTCATTCCTCCTCAT
TTCCTCGATATATTCACACCTTTCTCGATAATCGTACACTCTC
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