DY259923

Overview
NameDY259923
Unique NameDY259923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length993
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPH_ENCCU (T-complex protein 1 subunit eta OS=Encephalitozoon cuniculi GN=CCT7 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.005e-16
Identity = 50/162 (30.86%), Postives = 88/162 (54.32%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            G+    R+ K D  R+  +CG  I+   D L E  +G  A LFE +++G   + +  +     ACT++LRG  +++L ++ R++ DA+ V R  +   K+V GGG+ E+ +S  +++KS   +    +  +A   AFE IP  LA N G++   T+  L ++
Sbjct:  296 GIFCAGRVSKEDLGRVVGSCGGSILGATDYL-EGSLGACA-LFEERQLGKFRYNYF-EGGGTSACTMILRGPGQEVLEEIGRSVHDAVCVVRTALRTRKVVTGGGSVEMELSRIIREKSMKYDDKRMFVAKAVGQAFEKIPLLLARNFGLDTISTIQDLRKR 454          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.759e-16
Identity = 49/173 (28.32%), Postives = 88/173 (50.87%), Query Frame = 2
Query:    5 ITVGVSAIRRLRKTDNNRIAKACGAVIVNT------PDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARKTR 505
            +  G  A+RR++K+D   IAKA GA  + +       +    S VG  A + + ++I D+    I   K   A +++LRG +    +++ER++ DA+ V + ++ + K+V GGG  E  +S  L+  ++S+   E+      A +   IP+TL+    +N  +  T L  K R
Sbjct:  304 VEAGAMAVRRVKKSDLKIIAKATGAAFITSLTNMDGEESFDASMVGEAAEVAQ-ERICDDELILIKGTKARAAASIILRGPNDFYCDEMERSVHDALCVVKRVLESKKVVAGGGCVEAALSIYLENFATSLASREQLAIAEFAKSLLVIPKTLS----VNAAKDATDLVAKLR 471          

HSP 2 Score: 31.9574 bits (71), Expect = 5.759e-16
Identity = 16/49 (32.65%), Postives = 25/49 (51.02%), Query Frame = 3
Query:  522 WIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPL 668
            W G+D   G + D K+  + +P  +    L  A EAA  +L+ DD+  L
Sbjct:  488 WTGLDLIEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKL 536          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 8.923e-16
Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP-KACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            +  I+ + + D   I K  G   V   D+     +G+     EV   G      I  C  P K  T+++RG++K ++ + ER++ DA+ V R ++    L+ GGGA E+ ++  L + S ++ G+E +   A A A E IP TLA N G+N   T+T L  +
Sbjct:  322 IMVIKDIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNR 483          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 8.923e-16
Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP-KACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            +  I+ + + D   I K  G   V   D+     +G+     EV   G      I  C  P K  T+++RG++K ++ + ER++ DA+ V R ++    L+ GGGA E+ ++  L + S ++ G+E +   A A A E IP TLA N G+N   T+T L  +
Sbjct:  322 IMVIKDIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNR 483          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 8.923e-16
Identity = 49/162 (30.25%), Postives = 82/162 (50.62%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP-KACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            +  ++ + + D   I K  G   V   D+     +G+     EV   G      I  C  P K  T+++RG++K ++ + ER++ DA+ V R ++    L+ GGGA E+ ++  L + S ++ G+E +   A A A E IP TLA N G+N   T+T L  +
Sbjct:  325 IMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNR 486          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.522e-15
Identity = 49/162 (30.25%), Postives = 82/162 (50.62%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP-KACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            +  ++ + + D   I K  G   V   D+     +G+     EV   G      I  C  P K  T+++RG++K ++ + ER++ DA+ V R ++    L+ GGGA E+ ++  L + S ++ G+E +   A A A E IP TLA N G+N   T+T L  +
Sbjct:  322 IMVVKDIEREDIEFICKTIGTKPVAHIDQFTPDMLGSAELAEEVSLNGSGKLFKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNR 483          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.988e-15
Identity = 49/162 (30.25%), Postives = 82/162 (50.62%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP-KACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            +  ++ + + D   I K  G   V   D+     +G+     EV   G      I  C  P K  T+++RG++K ++ + ER++ DA+ V R ++    L+ GGGA E+ ++  L + S ++ G+E +   A A A E IP TLA N G+N   T+T L  +
Sbjct:  322 IMVVKDVEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVSLNGSGKLFKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNR 483          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.988e-15
Identity = 48/168 (28.57%), Postives = 89/168 (52.98%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFI-VDCKDPK-ACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            L  + +  I+ + + +   ++KA G   +   D   E  +G+   + E++  G        V  K+ K   +++ RGA++ +L++ ER++ DA+ V R ++    L+ GGGA E+ VS  L  +++ + G+E++ Y+  A A E IP TLA N G+N    +T L  +
Sbjct:  310 LSKLNIMVIKDIERDEIEFLSKATGCKPIADIDNFTEDRLGSADVVEEIESSGSRIVKIDGVSAKNVKPTVSIVCRGANQLVLDETERSIHDALCVVRCLVKEKALIAGGGAPEIEVSRVLMSEANKLSGVEQFVYQEFAQALEVIPTTLAENAGLNSINVVTDLRNR 477          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.136e-15
Identity = 49/157 (31.21%), Postives = 86/157 (54.78%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNT-----PDELQESD-VGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHN 454
            L+  GV  +RR+ K D  R+AKA G  IV T      DE+ E+  +G  A ++E + +GD    F    K     ++++RGA++ ++++V+R+L D++ V +  + +  +VPGGGA E+ +S  L+  + ++   E+        A   IP+ LA N
Sbjct:  300 LVEAGVMGLRRVDKHDLRRLAKATGGTIVTTLATPEGDEVFEASYLGECAEVYE-EAVGDNDCIFFKGTKRANCASIIIRGANEFMVDEVDRSLHDSLCVVKRTLESGYVVPGGGAVEIALSIKLEDFARTLGTKEQTAVAEFCEALNIIPKVLAAN 455          

HSP 2 Score: 25.0238 bits (53), Expect = 2.136e-15
Identity = 14/55 (25.45%), Postives = 26/55 (47.27%), Query Frame = 3
Query:  528 GIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPLTSRKNRPP 692
            G+D + G + +  +  + +P  +    L  A EAA  +L+ DD+  L  +    P
Sbjct:  489 GLDLSLGKVRNNVKAGVLEPMVSKIKSLRFATEAAITILRIDDMIKLNPQNEELP 543          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA_ENCCU (T-complex protein 1 subunit alpha OS=Encephalitozoon cuniculi GN=TCP1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.137e-15
Identity = 50/158 (31.65%), Postives = 88/158 (55.70%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGL---FEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGIN 466
            L+   V  IRR +K D   IAKA G  +V++  ++  +D  +  G    FEV +IG+E    I   K  K  +++LRGA+  LL++++R++ DA+ V +  + +  +VPGGGA E  +S  L++ + ++   E       A +  +IP+ L+ N G++
Sbjct:  305 LVEADVVGIRRCKKEDLLVIAKATGTSLVSSIADISGADSISSLGFADKFEVVQIGEEECVLINGLKK-KMASIILRGANCQLLDEMQRSVHDAVCVLKRTLESNSVVPGGGAVECALSLMLEKFAFTVNSKEHVAIHRYAESLLSIPKILSTNAGLD 461          

HSP 2 Score: 25.0238 bits (53), Expect = 2.137e-15
Identity = 14/51 (27.45%), Postives = 25/51 (49.02%), Query Frame = 3
Query:  507 NGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            +  + ++GID   G I D  +  I +P       L  A EAA  +L+ +++
Sbjct:  480 SSGSKFLGIDVTSGKIQDNFEFGIIEPSVNKMKSLKAATEAAISILRINEV 530          
The following BLAST results are available for this feature:
BLAST of DY259923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TCPH_ENCCU4.005e-1630.86T-complex protein 1 subunit eta OS=Encephalitozoon... [more]
TCPA_DROME5.759e-1628.32T-complex protein 1 subunit alpha OS=Drosophila me... [more]
TCPD_PONAB8.923e-1630.86T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_HUMAN8.923e-1630.86T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPD_BOVIN8.923e-1630.25T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPD_RAT1.522e-1530.25T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE1.988e-1530.25T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_DEBHA1.988e-1528.57T-complex protein 1 subunit delta OS=Debaryomyces ... [more]
TCPA_TETPY2.136e-1531.21T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]
TCPA_ENCCU2.137e-1531.65T-complex protein 1 subunit alpha OS=Encephalitozo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259923 ID=DY259923; Name=DY259923; organism=Citrus clementina; type=EST; length=993bp
TCTAATCACCGTTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACA
ATAATAGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACACACCAGAT
GAATTGCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAA
GAAAATTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAA
AAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAC
GTGGAAAGAAATTTGCGGGATGCAATGTCTGTGGCAAGAAACATAATCAA
CAATCCGAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCCG
CCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCCTCGAAAAGTGGCCT
TATGAAGCTGCTGCTATCGCTTTTGAGGCTATACCAAGAACTTTGGCTCA
TAATTGTGGGATTAATGTATTTCGGACCATGACTGCCCTTGCAAGGAAAA
CACGCTAATGGTGCAAATGCATGGATCGGCATAGATGGAAACCCTGGTGC
AATTTCTGACATGAAACAGCAGAAGATCCGGGATCCCCATCATGCGAACG
CCCCACCTCTTAATACCGCCATTGAAGCTGCCTGCATGCTTCTCAAGAAC
GATGACATTTGTCCATTGACATCAAGAAAAAACAGGCCCCCTGGGTTAAG
ACAAACCTCCTCAAAACCCTCGATAGTAACCGTAAGCCACTCCTCCCATC
GATCTAATTTCCCCTGGAACACATCGCTTTTCTATGTCACGTCGTGCCTA
ATCTAACTCTTTTGAATACCACGTAGCGCCTACTCTCTACTGAATCCTCC
CCCCCCTACTATGCTCAACTCTCCCCTCCATAGTTCGTGTCTAGAGACAC
TTGTAATAGGATATTGGAGCAAACTCATCTAAGGATTCATTCCTCCTCAT
TTCCTCGATATATTCACACCTTTCTCGATAATCGTACACTCTC
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