DY259923

Overview
NameDY259923
Unique NameDY259923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length993
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.391e-15
Identity = 49/166 (29.52%), Postives = 90/166 (54.22%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFI---VDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            L  +G+  +R + + +   ++K+ G   ++  +   E  +G+   + EV+  G             K+P   +V++RGA+  +L++ ER+L DA+ V R ++    L+ GGGA E+ VS  L +++ ++EG+E + ++  A A E IP TLA N G+N    +T L
Sbjct:  307 LSKLGIMVVRDIERDEVEFLSKSLGCKPISDVELFTEDRLGSADVVEEVESDGSNIVTITGVKTTNKNPTV-SVVIRGANNMVLDETERSLHDALCVIRCLVKERALIAGGGAPEIEVSYRLMKEARTMEGVEAFVWQEYAEALEVIPTTLAENAGLNSLNVVTEL 471          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 72.0182 bits (175), Expect = 3.609e-15
Identity = 45/149 (30.20%), Postives = 75/149 (50.34%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCG 460
            GV AI         R+A   G  I +T D  +   +G+   L E   IG++           +ACT++LRGA++ +L++ ER+L DA+ V    + +P+ V GGG +E+ ++  + Q ++   G E    E+ A A   +P  +A N G
Sbjct:  308 GVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGS-CKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESFAKALRMLPTIIADNAG 455          

HSP 2 Score: 30.8018 bits (68), Expect = 3.609e-15
Identity = 21/67 (31.34%), Postives = 31/67 (46.27%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPLTSRKNRP 689
            L+  H+ G +   G+D   G I DM    I +        L +A EAA ++L+ D+I     RK  P
Sbjct:  465 LRAAHSEG-HITAGLDMKEGTIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.093e-15
Identity = 45/149 (30.20%), Postives = 74/149 (49.66%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCG 460
            GV AI         R+A   G  I +T D  +   +G+   L E   IG++           +ACT++LRGA++ +L++ ER+L DA+ V    + +P+ V GGG +E+ ++  +   +S   G E    E+ A A   +P  +A N G
Sbjct:  308 GVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGS-CKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTMLASRTPGKEAVAMESFAKALRMLPTIIADNAG 455          

HSP 2 Score: 30.8018 bits (68), Expect = 6.093e-15
Identity = 21/67 (31.34%), Postives = 31/67 (46.27%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPLTSRKNRP 689
            L+  H+ G     G+D   G+I DM    I +        L +A EAA ++L+ D+I     RK  P
Sbjct:  465 LRAAHSEG-RITAGLDMKEGSIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 7.553e-15
Identity = 47/168 (27.98%), Postives = 93/168 (55.36%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            L+   + A+R +   +   IA +    IV    +L +  +GT + ++E ++ G   +    I   K+ K  T  +RG++K ++++ ER L D++ V RN++ + ++V GGGA E+T+S  + +++    G++++ +   A A + IP TLA N G++   T++ L  K
Sbjct:  335 LLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYE-QEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSK 501          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.553e-15
Identity = 47/162 (29.01%), Postives = 81/162 (50.00%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP-KACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            +  ++ + + D   I K  G   +   D      +GT     EV   G      I  C  P K  ++++RG++K ++ + ER++ DA+ V R ++    L+ GGGA E+ ++  L + S ++ G+E +   A + A E IP TLA N G+N   T+T L  +
Sbjct:  319 IMVVKDIEREDIEFICKTIGTKPIAHIDHFTPEMLGTAELAEEVSLDGSGKLVKITGCASPGKTVSIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELAVRLAEYSRTLGGMEAYCVRAYSDALEVIPSTLAENAGLNPISTVTELRNR 480          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.917e-15
Identity = 34/97 (35.05%), Postives = 60/97 (61.86%), Query Frame = 2
Query:  209 TVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARK 499
            ++++RG++K +L + ER+L DA+ V R ++     + GGGA E+ ++  L   + ++EG++ + + A A A E IP TLA N G+N   T+T L  +
Sbjct:  380 SIVVRGSNKLVLEEAERSLHDALCVVRCLVKKRAQIAGGGAPEIEMAIQLAAHAQTLEGVDAYCFRAFANALEVIPSTLAENAGLNPIATVTELRNR 476          

HSP 2 Score: 29.6462 bits (65), Expect = 7.917e-15
Identity = 18/57 (31.58%), Postives = 28/57 (49.12%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDI 659
            L+ +HA G     GI+   GAI+D+  + +  P   +   +  A E    +LK DDI
Sbjct:  473 LRNRHAQGEKN-AGINVRKGAITDILAENVVQPLLVSTSSITLASETVRSILKIDDI 528          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-15
Identity = 45/149 (30.20%), Postives = 74/149 (49.66%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCG 460
            GV AI         R+A   G  I +T D  +   +G+   L E   IG++           +ACT++LRGA++ +L++ ER+L DA+ V    + + + V GGG +E+ ++  + Q +S   G E    E+ A A   +P  +A N G
Sbjct:  308 GVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGS-CKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAG 455          

HSP 2 Score: 31.5722 bits (70), Expect = 7.917e-15
Identity = 21/67 (31.34%), Postives = 30/67 (44.78%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPLTSRKNRP 689
            L+  H+ G     G+D   G I DM    I +        L +A EAA ++L+ D+I     RK  P
Sbjct:  465 LRAAHSEGKTT-AGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 7.917e-15
Identity = 44/149 (29.53%), Postives = 74/149 (49.66%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCG 460
            GV AI         R+A   G  I +T D  +   +G+   L E   IG++           +ACT++LRGA++ +L++ ER+L DA+ V    + + + V GGG +E+ ++  + Q ++   G E    E+ A A   +P  +A N G
Sbjct:  308 GVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGS-CKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAG 455          

HSP 2 Score: 32.7278 bits (73), Expect = 7.917e-15
Identity = 22/67 (32.84%), Postives = 31/67 (46.27%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPLTSRKNRP 689
            L+  H+ G N   G+D   G I DM    I +        L +A EAA ++L+ D+I     RK  P
Sbjct:  465 LRAAHSEG-NTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 68.9366 bits (167), Expect = 7.917e-15
Identity = 44/149 (29.53%), Postives = 74/149 (49.66%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCG 460
            GV AI         R+A   G  I +T D  +   +G+   L E   IG++           +ACT++LRGA++ +L++ ER+L DA+ V    + + + V GGG +E+ ++  + Q ++   G E    E+ A A   +P  +A N G
Sbjct:  308 GVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGS-CKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAG 455          

HSP 2 Score: 32.7278 bits (73), Expect = 7.917e-15
Identity = 22/67 (32.84%), Postives = 31/67 (46.27%), Query Frame = 3
Query:  489 LQGKHANGANAWIGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPLTSRKNRP 689
            L+  H+ G N   G+D   G I DM    I +        L +A EAA ++L+ D+I     RK  P
Sbjct:  465 LRAAHSEG-NTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRKRVP 530          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.028e-14
Identity = 51/172 (29.65%), Postives = 87/172 (50.58%), Query Frame = 2
Query:    5 ITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEV-----KKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTALARKTR 505
            +  G  A+RR+RK D   +AKA GA +V T  +++  +    A L        ++I D+    I   K   A +++LRGA+  +L+++ER L DA+ + +  + +  +V GGGA E  +S  L+  ++++   E+      A A   IP+ LA    +N  +  T L  K R
Sbjct:  304 VEAGAIAVRRVRKEDMRHVAKATGATLVTTFADMEGEETFDPAHLGSADEVVEERIADDDVILIKGTKTSSAVSLILRGANDYMLDEMERALHDALCIVKRTLESNTVVAGGGAVESALSVYLEHLATTLGSREQLAIAEFADALLIIPKVLA----VNAAKDATELVAKLR 471          

HSP 2 Score: 23.0978 bits (48), Expect = 1.028e-14
Identity = 13/54 (24.07%), Postives = 27/54 (50.00%), Query Frame = 3
Query:  525 IGIDGNPGAISDMKQQKIRDPHHANAPPLNTAIEAACMLLKNDDICPLTSRKNR 686
            +G+D   G I +  +  + +P  +    +  A EAA  +L+ DD+  L   +++
Sbjct:  489 MGLDLVNGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLVKDESQ 542          
The following BLAST results are available for this feature:
BLAST of DY259923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TCPD_KLULA3.391e-1529.52T-complex protein 1 subunit delta OS=Kluyveromyces... [more]
TCPB_MOUSE3.609e-1530.20T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPB_RAT6.093e-1530.20T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPE_YEAST7.553e-1527.98T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]
TCPD_TAKRU7.553e-1529.01T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_AEDTR7.917e-1535.05T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPB_BOVIN7.917e-1530.20T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPB_MACFA7.917e-1529.53T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN7.917e-1529.53T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPA_ARATH1.028e-1429.65T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259923 ID=DY259923; Name=DY259923; organism=Citrus clementina; type=EST; length=993bp
TCTAATCACCGTTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACA
ATAATAGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACACACCAGAT
GAATTGCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAA
GAAAATTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAA
AAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAC
GTGGAAAGAAATTTGCGGGATGCAATGTCTGTGGCAAGAAACATAATCAA
CAATCCGAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCCG
CCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCCTCGAAAAGTGGCCT
TATGAAGCTGCTGCTATCGCTTTTGAGGCTATACCAAGAACTTTGGCTCA
TAATTGTGGGATTAATGTATTTCGGACCATGACTGCCCTTGCAAGGAAAA
CACGCTAATGGTGCAAATGCATGGATCGGCATAGATGGAAACCCTGGTGC
AATTTCTGACATGAAACAGCAGAAGATCCGGGATCCCCATCATGCGAACG
CCCCACCTCTTAATACCGCCATTGAAGCTGCCTGCATGCTTCTCAAGAAC
GATGACATTTGTCCATTGACATCAAGAAAAAACAGGCCCCCTGGGTTAAG
ACAAACCTCCTCAAAACCCTCGATAGTAACCGTAAGCCACTCCTCCCATC
GATCTAATTTCCCCTGGAACACATCGCTTTTCTATGTCACGTCGTGCCTA
ATCTAACTCTTTTGAATACCACGTAGCGCCTACTCTCTACTGAATCCTCC
CCCCCCTACTATGCTCAACTCTCCCCTCCATAGTTCGTGTCTAGAGACAC
TTGTAATAGGATATTGGAGCAAACTCATCTAAGGATTCATTCCTCCTCAT
TTCCTCGATATATTCACACCTTTCTCGATAATCGTACACTCTC
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