DY259923

Overview
NameDY259923
Unique NameDY259923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length993
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPQ_PONAB (T-complex protein 1 subunit theta OS=Pongo abelii GN=CCT8 PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 1.288e-14
Identity = 52/161 (32.30%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVN--TPDELQESDVGTGAGLFEVKKIGD-EFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            +  +R   K D  R+ K  GA  +   TP  L+E        L EV   GD +   F  + +D    T++LRG++ +L++D+ER + D ++  + +  + +LVPGGGATE+ ++  +     +  GLE++  +  A AFEAIPR LA N G+     ++ L
Sbjct:  310 IMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEV---GDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKL 467          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPQ_MACFA (T-complex protein 1 subunit theta OS=Macaca fascicularis GN=CCT8 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.288e-14
Identity = 52/161 (32.30%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVN--TPDELQESDVGTGAGLFEVKKIGD-EFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            +  +R   K D  R+ K  GA  +   TP  L+E        L EV   GD +   F  + +D    T++LRG++ +L++D+ER + D ++  + +  + +LVPGGGATE+ ++  +     +  GLE++  +  A AFEAIPR LA N G+     ++ L
Sbjct:  310 IMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVCLSEV---GDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKL 467          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPQ_HUMAN (T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 1.288e-14
Identity = 52/161 (32.30%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVN--TPDELQESDVGTGAGLFEVKKIGD-EFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            +  +R   K D  R+ K  GA  +   TP  L+E        L EV   GD +   F  + +D    T++LRG++ +L++D+ER + D ++  + +  + +LVPGGGATE+ ++  +     +  GLE++  +  A AFEAIPR LA N G+     ++ L
Sbjct:  310 IMLVRLNSKWDLRRLCKTVGATALPRLTPPVLEEMGHCDSVYLSEV---GDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKL 467          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPQ_CHICK (T-complex protein 1 subunit theta OS=Gallus gallus GN=CCT8 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.683e-14
Identity = 51/158 (32.28%), Postives = 85/158 (53.80%), Query Frame = 2
Query:   26 IRRLRKTDNNRIAKACGAVIVN--TPDELQESDVGTGAGLFEVKKIGD-EFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            +R   K D  R+ K  GA  +   TP  L+E        L EV   GD +   F  + +D    T+L+RG++ +L++D+ER + D ++  + +  + +LVPGGGATE+ ++  +     +  GL+++  +  A AFEAIPR LA N G+     ++ L
Sbjct:  313 VRLNSKWDLRRLCKTVGATALPRLTPPTLEEMGHCNSVYLSEV---GDTQVVVFKHEKEDGAISTILIRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLDQYAIKKFAEAFEAIPRALAENSGVKANEVISKL 467          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPQ_MOUSE (T-complex protein 1 subunit theta OS=Mus musculus GN=Cct8 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 2.198e-14
Identity = 46/159 (28.93%), Postives = 87/159 (54.72%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGD-EFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            +  +R   K D  R+ K  GA  +       + ++G    ++ + ++GD +   F  + +D    T++LRG++ +L++D+ER + D ++  + +  + +LVPGGGATE+ ++  +     +  GLE++  +  A AFEAIPR LA N G+     ++ L
Sbjct:  310 IMLVRLNSKWDLRRLCKTVGATALPKLTPPVQEEMGHCDSVY-LSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKL 467          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_YARLI (T-complex protein 1 subunit delta OS=Yarrowia lipolytica GN=CCT4 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.198e-14
Identity = 49/163 (30.06%), Postives = 87/163 (53.37%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            L  + +  I+ + + D   I+++ GA  V   +   E  +G+   + EV+  G +   F    +     ++L+RGA+  ++++ ER+L DA+ V R++   P LVPGGGA E+ V+  + ++S +++G     YE  + A   IP TLA N G+N    +T L
Sbjct:  308 LAKLNIMVIKDIERDDIEFISRSTGAKPVADIEAFTEDKLGSCDLVEEVESSGSKTVRFS-SREGSNTVSILVRGANDLVIDETERSLHDALCVLRSLFRVPALVPGGGACEVQVAQVIGKESRAMDGASAICYEEFSNAMLVIPTTLAENAGLNPVNVVTEL 469          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPQ_BOVIN (T-complex protein 1 subunit theta OS=Bos taurus GN=CCT8 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 4.896e-14
Identity = 46/159 (28.93%), Postives = 87/159 (54.72%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGD-EFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            +  +R   K D  R+ K  GA  +   +     ++G    ++ + ++GD +   F  + +D    T++LRG++ +L++D+ER + D ++  + +  + +LVPGGGATE+ ++  +     +  GLE++  +  A AFEAIPR LA N G+     ++ L
Sbjct:  310 IMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVY-LSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKL 467          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.091e-13
Identity = 47/166 (28.31%), Postives = 90/166 (54.22%), Query Frame = 2
Query:    2 LITVGVSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKA---CTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCGINVFRTMTAL 490
            L  + +  I+ + + +   ++K+ G   ++  +   E  +G+   + E+   G +    I   K   A    + ++RGA+  +L++ ER+L DA+ V R ++    L+ GGGA E+ VS T+ ++S +++G+E + ++  A A E IP TLA N G+N  + +T L
Sbjct:  306 LSKLNIVVIKDVERDEIEFLSKSLGCKPISDVELFTEDRLGSADLVEEIDSDGTKIVK-ITGIKTGNAKPTVSCIVRGANNVVLDETERSLHDALCVIRCLVKERALIAGGGAPEIEVSRTIMRESRAMQGVEAFVWQEFAEALEVIPTTLAENAGLNSIKVVTEL 470          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPZ_YEAST (T-complex protein 1 subunit zeta OS=Saccharomyces cerevisiae GN=CCT6 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.860e-13
Identity = 43/153 (28.10%), Postives = 81/153 (52.94%), Query Frame = 2
Query:   17 VSAIRRLRKTDNNRIAKACGAVIVNTPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSS---IEGLEKWPYEAAAIAFEAIPRTLAHNCGIN 466
            + A+RR ++ +  R+    G    N+ ++L    +G  +GL   + IG+E F ++ +  DPK+CT+L++G++   L   +  +RD +    N++ +  ++PG GA  + +S  L+  + +    +G  K   EA A A   IP+TL  N G +
Sbjct:  314 ILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGF-SGLVYQETIGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFD 465          
BLAST of DY259923 vs. ExPASy Swiss-Prot
Match: TCPQ_CANAL (T-complex protein 1 subunit theta OS=Candida albicans GN=CCT8 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.430e-13
Identity = 51/155 (32.90%), Postives = 82/155 (52.90%), Query Frame = 2
Query:   14 GVSAIRRLRKTDNNRIAKACGAVIVN-----TPDELQESDVGTGAGLFEVKKIG-DEFFAFIVDCKDPKACTVLLRGASKDLLNDVERNLRDAMSVARNIINNPKLVPGGGATELTVSATLKQKSSSIEGLEKWPYEAAAIAFEAIPRTLAHNCG 460
            G+  +R   K D  RI + CGA  +      TPDE+ E D+       E K+IG D    F  D    +  T+++RGA+++ L+D+ER + D ++  + +I + +L+PG GA E+ +   +    S+  GL +   ++ A AFE IPR LA   G
Sbjct:  306 GILVLRVPSKFDLRRICQVCGATPLPRLGAPTPDEMGEIDI------IETKEIGGDRVTIFRQDESSSRTATIVVRGATQNNLDDIERAIDDGVNSIKGLIKDNRLLPGAGAVEIELMKRITAYQST-PGLLQLAIKSFAKAFEVIPRVLAETSG 453          
The following BLAST results are available for this feature:
BLAST of DY259923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TCPQ_PONAB1.288e-1432.30T-complex protein 1 subunit theta OS=Pongo abelii ... [more]
TCPQ_MACFA1.288e-1432.30T-complex protein 1 subunit theta OS=Macaca fascic... [more]
TCPQ_HUMAN1.288e-1432.30T-complex protein 1 subunit theta OS=Homo sapiens ... [more]
TCPQ_CHICK1.683e-1432.28T-complex protein 1 subunit theta OS=Gallus gallus... [more]
TCPQ_MOUSE2.198e-1428.93T-complex protein 1 subunit theta OS=Mus musculus ... [more]
TCPD_YARLI2.198e-1430.06T-complex protein 1 subunit delta OS=Yarrowia lipo... [more]
TCPQ_BOVIN4.896e-1428.93T-complex protein 1 subunit theta OS=Bos taurus GN... [more]
TCPD_ASHGO1.091e-1328.31T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]
TCPZ_YEAST1.860e-1328.10T-complex protein 1 subunit zeta OS=Saccharomyces ... [more]
TCPQ_CANAL2.430e-1332.90T-complex protein 1 subunit theta OS=Candida albic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259923 ID=DY259923; Name=DY259923; organism=Citrus clementina; type=EST; length=993bp
TCTAATCACCGTTGGCGTTAGTGCAATTAGGAGGCTAAGGAAGACAGACA
ATAATAGAATTGCCAAAGCATGTGGTGCTGTTATTGTGAACACACCAGAT
GAATTGCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGAGGTTAA
GAAAATTGGTGATGAATTCTTTGCTTTCATTGTTGATTGCAAAGATCCAA
AAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTGAATGAC
GTGGAAAGAAATTTGCGGGATGCAATGTCTGTGGCAAGAAACATAATCAA
CAATCCGAAACTAGTACCTGGTGGAGGGGCTACAGAATTAACAGTATCCG
CCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCCTCGAAAAGTGGCCT
TATGAAGCTGCTGCTATCGCTTTTGAGGCTATACCAAGAACTTTGGCTCA
TAATTGTGGGATTAATGTATTTCGGACCATGACTGCCCTTGCAAGGAAAA
CACGCTAATGGTGCAAATGCATGGATCGGCATAGATGGAAACCCTGGTGC
AATTTCTGACATGAAACAGCAGAAGATCCGGGATCCCCATCATGCGAACG
CCCCACCTCTTAATACCGCCATTGAAGCTGCCTGCATGCTTCTCAAGAAC
GATGACATTTGTCCATTGACATCAAGAAAAAACAGGCCCCCTGGGTTAAG
ACAAACCTCCTCAAAACCCTCGATAGTAACCGTAAGCCACTCCTCCCATC
GATCTAATTTCCCCTGGAACACATCGCTTTTCTATGTCACGTCGTGCCTA
ATCTAACTCTTTTGAATACCACGTAGCGCCTACTCTCTACTGAATCCTCC
CCCCCCTACTATGCTCAACTCTCCCCTCCATAGTTCGTGTCTAGAGACAC
TTGTAATAGGATATTGGAGCAAACTCATCTAAGGATTCATTCCTCCTCAT
TTCCTCGATATATTCACACCTTTCTCGATAATCGTACACTCTC
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